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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAAAGCGGCTCATGAGACTGAGAGTGCTTGCCAAGAAAGGCTTGCTACCGCCAAGGCTGAAATTGCTGAATTGAGGACTCAGTTAGATCTTTCTGAGAGgtatgctctctcatggtaccacatccaaggtcattcattatattcttttcaccgttttgggggcattaatcagtattatattgctttctcatttgcag

Basic information

species Arabidopsis thaliana
transcript AT1G55250.4
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86042840|gb|DR338595.1|DR338595
EST:     CCAAGGCTGAAATTGCTGAATTGAGGACTCAGTTAGAATCTTTCTGAGAG                         GGAGGTTTTGGAACTTAAGGAGGGTATTAAAGTT
genomic: CCAAGGCTGAAATTGCTGAATTGAGGACTCAGTTAGA-TCTTTCTGAGAGgtatgctctc ... tcatttgcagGGAGGTTTTGGAACTTAAGGAGGGTATTAAAGTT
EST: gi|86042839|gb|DR338594.1|DR338594
EST:     GCCAAGGCTGAAATTGCTGAATTGAGGACTCAGTTAGATCTTTCTGAGAG                         GGAGGTTTTGGAACTTAAGGAGGGTATTAAAGTTAAAGAGCAGGAGGCAGA
genomic: GCCAAGGCTGAAATTGCTGAATTGAGGACTCAGTTAGATCTTTCTGAGAGgtatgctctc ... tcatttgcagGGAGGTTTTGGAACTTAAGGAGGGTATTAAAGTTAAAGAGCAGGAGGCAGA