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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGGGACGTGATCTTATCGGCATTGCTGAAACTGGTTCTGGAAAGACTCTTTCTTACTTACTACCTGCTATTGTCCATGTTAATGCCCAACCAATGTTAGgtaatgcttgatttctgctcctggagttctttttttttttcgttcttgtttgatggaagttgtaaaaggctgtactgattgaaataaaatttcccag

Basic information

species Arabidopsis thaliana
transcript AT1G55150.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G55150.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: LOC_Os01g10050.1 (Oryza sativa), 5'ss of exon 3
AAGGGACGTGATCTTATCGGCATTGCTGAAACTGGTTCTGGAAAGACTCTTTCTTACTTACTACCTGCTATTGTCCATGTTAATGCCCAACCAATGTTAGgta--atgcttgatttctgctcctggagttctttttttt------tttcgttcttgtttgatggaagttgtaaaaggctgtactgattgaaataaaatttcccag
| ||||||||||||||| |||||||||||||| || || || || || ||| ||||| |  ||||||| ||||| ||||||||||| || || ||  |||||   |    |   || || | ||  |    |||| ||       ||  |  ||| |||  ||| | |     ||   | | | |  ||  || |||        
AGGGGACGTGATCTTATTGGCATTGCTGAAACAGGATCAGGGAAAACACTTGCTTACCTTTTACCTGCCATTGTTCATGTTAATGCTCAGCCGATTCTAGgtgcgaaatgttgcttatgtttcttaaccgattttcttggatacattctggacttcttttgtggtaatctactaacatttttccgtgtgttattaaag-------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116454669|gb|EG497261.1|EG497261
EST:     TTCTTACTTACTACCTGCTATTGTCCATGTTAATGCCCAACCAATGTTAG                         CTCATGGTGACGGCCCAATCGTCTCGGTTCTTGCTCCCACTCGTGAACTGG
genomic: TTCTTACTTACTACCTGCTATTGTCCATGTTAATGCCCAACCAATGTTAGgtaatgcttg ... aatttcccagCTCATGGTGACGGCCCAATCGTCTTGGTTCTTGCTCCCACTCGTGAACTGG