1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TGCTGGAAACATTCATACGCAGGTCACAGAGATTCTTCTTCAAGAGATTTTTGCAAGTACTGGTCCTATTGAAAGCTGTAAACTCATCAGAAAGGATAAGgtagagttttggaacccgcccttctgttttttattcgaatgaagcttttcggtagtgttctttgaaagctaacttctagacatgaatgttttacacttttgcag
species | Arabidopsis thaliana |
transcript | AT1G54080.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTGCAAGTACTGGTCCTATTGAAAGCTGTAAACTCATCAGAAAGGATAAG TCATCATATGGATTTGTTCACTACTTTGATCGAAGATEST: gi|86052517|gb|DR348274.1|DR348274
genomic: TTGCAAGTACTGGTCCTATTGAAAGCTGTAAACTCATCAGAAAGGATAAGgtagagtttt ... acttttgcagTCATCATATGGATTTGTTCACTACTTTGATCGAAGAT
EST: TTGCAAGTACTGGTCCTATTGAAAGCTGTAAACTCATCAGAAAGGATAAG TCATCATATGGATTTGTTCACTACTTTGATCGAAGATGTGCTAGTATGGCTEST: gi|125255088|gb|EL269173.1|EL269173
genomic: TTGCAAGTACTGGTCCTATTGAAAGCTGTAAACTCATCAGAAAGGATAAGgtagagtttt ... acttttgcagTCATCATATGGATTTGTTCACTACTTTGATCGAAGATGTGCTAGTATGGCT
EST: TTGCAAGTACTGGTCCTATTGAAAGCTGTAAACTCATCAGAAAGGATAAG TCATCATATGGATEST: gi|164208889|gb|ES026100.1|ES026100
genomic: TTGCAAGTACTGGTCCTATTGAAAGCTGTAAACTCATCAGAAAGGATAAGgtagagtttt ... acttttgcagTCATCATATGGAT
EST: TCCTATTGAAAGCTGTAAACTCATCAGAAAGGATAAG TCATCATATGGATTTGTTCACTACTTTGATCGAAGATGTGCTAGTATGGCTEST: gi|125239302|gb|EL253387.1|EL253387
genomic: TCCTATTGAAAGCTGTAAACTCATCAGAAAGGATAAGgtagagtttt ... acttttgcagTCATCATATGGATTTGTTCACTACTTTGATCGAAGATGTGCTAGTATGGCT
EST: TTGCAAGTACTGGTCCTATTGAAAGCTGTAAACTCATCAGAAAGGATAAG TCATCATATGGATTTGTTCACTACTEST: gi|125262858|gb|EL276943.1|EL276943
genomic: TTGCAAGTACTGGTCCTATTGAAAGCTGTAAACTCATCAGAAAGGATAAGgtagagtttt ... acttttgcagTCATCATATGGATTTGTTCACTACT
EST: TGCAAGTACTGGTCCTATTGAAAGCTGTAAACTCATCAAGAAAGGATAAG TCATCATATGGAT
genomic: TGCAAGTACTGGTCCTATTGAAAGCTGTAAACTCATCA-GAAAGGATAAGgtagagtttt ... acttttgcagTCATCATATGGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCTGGAAACATTCATACGCAGGTCACAGAGATTCTTCTTCAAGAGATTTTTGCAAGTACTGGTCCTATTGAAAGCTGTAAACTCATCAGAAAGGATAAGgtagagttttggaacccgcccttctgttttttattcgaatgaagcttttcggtagtgttctttgaaagctaacttctagacatgaatgttttacacttttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG