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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGAAGATATGGCCAATATGCATGGAACAGATAGCGTCTCAGAAGATTCTGGGTCCAATCATACCTTGGTTCTTGGAAAAATATAGACCTTGGACAGCGgtatccgtgtctaagaaatatttacttctggtcttaactctgtatggcttgtaagaagtcacttgctggtattgacatctattacgatttatgtgcag

Basic information

species Arabidopsis thaliana
transcript AT1G53590.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G53590.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv19s0138g00140.t01 (Vitis vinifera), 5'ss of exon 3
GGAGAAGATATGGCCAATATGCATGGAACAGATAGCGTCTCAGAAGATTCTGGGTCCAATCATACCTTGGTTCTTGGAAAAATATAGACCTTGGACAGCGgtat---ccgtgtctaagaaatatttacttctggtcttaactctgtatggcttgtaagaagtcacttgctggtattgacatctattacgatttatgtgcag---
 || ||||| ||||| ||||| ||||||||||| |  || ||||| |||||   ||| |||||||||||||||||||| || || | ||| |||||||| ||||    ||  ||      ||| ||   | |  |||| ||    ||    ||  |      ||||   |||   |    ||| | |   ||| | | ||    
TGAAAAGATTTGGCCCATATGTATGGAACAGATTGTTTCACAGAAAATTCTCCTTCCTATCATACCTTGGTTCTTGGAGAAGTACAAACCCTGGACAGCTgtatgaatcgactcacttggataatt-tatgtattcttcacatctta--attttaagtgtaacactgattggggcttgtttct-tgatttttttttttcacttt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164054932|gb|ES027547.1|ES027547
EST:     TGGGTCCAATCATACCTTGGTTCTTGGAAAA-TATAGACCTTGGACAGCG                         AAAAAAGCTGTGATACAGCACCTTTACATGGG
genomic: TGGGTCCAATCATACCTTGGTTCTTGGAAAAATATAGACCTTGGACAGCGgtatccgtgt ... ttatgtgcagAAAAAAGCTGTGATACAGCACCTTTACATGGG