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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTGGAAATTCATGTAAAACCATCTTTGAAGCGGTCATCTTCGTCTTCGTTATGCATCCATTTGATGTCGGTGACAGGTGTGAAATAGACGGTGTCCAGgtttgtcccttgaaactctgtttctgtttttttacccgtcgttatgcatcaaaacttaaagaaagagctaatcctctgttttttttatgtatag

Basic information

species Arabidopsis thaliana
transcript AT1G53470.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G53470.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GRMZM2G303244_T01 (Zea mays), 5'ss of exon 3
GTTTGGAAATTCATGTAAAACCATCTTTGAAGCGGTCATCTTCGTCTTCGTTATGCATCCATTTGATGTCGGTGACAGGTGTGAAATAGACGGTGTCCAGgtttgtcccttgaaactctgtttctgtttttttacccgtcgttatgcatcaaaacttaaagaaagagctaatcctctgttttttttatgtatag
|||||| ||| | |  || ||  ||||||| ||  |  ||||| | ||||| |||||||| ||||||||||||||| | |||||||| || ||||| |||||       |||  |     || || ||  | |      |   |  |||   | |         |   ||    | |   |   ||   |  ||
GTTTGGGAATACGTTGAAGACGCTCTTTGAGGCAATTGTCTTCTTGTTCGTGATGCATCCCTTTGATGTCGGTGACCGCTGTGAAATTGAAGGTGTTCAGgtag-----ttgggatctctttgctcttactctttagtccaccaaacatttcatcgcgctcgctggcttaggtttttcactgccttgatttcag