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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTATGTTGCTGGTACTTAGGTCGTCGACGAGTTGCTATGCTTCTACTTCTCAGCCTTGCTTTTGTTGTCTTTGTGTTGGGTTCCTACACTATCAACAAAGgtattctcaaaatgtcttatgtatgatgttggttagatattggaatctgttggtaatgatgccttgcattgtgattacaacag

Basic information

species Arabidopsis thaliana
transcript AT1G53040.2
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19876982|gb|AU237813.1|AU237813
EST:     CAGCCTTGCTTTTGTTGTCTTTGTGTTGGGTTCCTACACTATCAACAAAG                         AGAGCAATAGTCCAAATATTCATCAGAGTATTGAGACGATGGATTTTGGAA
genomic: CAGCCTTGCTTTTGTTGTCTTTGTGTTGGGTTCCTACACTATCAACAAAGgtattctcaa ... attacaacagAGAGCAATAGTCCAAATATTCATCAGAGTATTGAGACGATGGATTTTGGAA
EST: gi|163994577|gb|ES137609.1|ES137609
EST:     CAGCCTTGCTTTTGTTGTCTTTGTGTTGGGTTCCTACACTATCAACAAAG                         AAGAGCAATAGTCCAAATATTCATCA
genomic: CAGCCTTGCTTTTGTTGTCTTTGTGTTGGGTTCCTACACTATCAACAAAGgtattctcaa ... attacaacagA-GAGCAATAGTCCAAATATTCATCA