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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAAAATTAGCGCAAAGGTCTGAGAGAGTTAAATCTGTGGATCTTCATCCTACAGAACCATGgtaatttcaagctttcgctttgctttcatacttttgtaccgttatttctgctactaacgactgggatggtaaaaacattggtttgcag

Basic information

species Arabidopsis thaliana
transcript AT1G52360.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G52360.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA07G03890.1 (Glycine max), 5'ss of exon 3
AGAAAATTAGCGCAAAGGTCTGAGAGAGTTAAATCTGTGGATCTTCATCCTACAGAACCATGgtaatttca-agctttcgctttgctttcatacttttgtaccgttatt--tctgctactaacgactgggatggtaaaaacat---tggtttgcag------
 ||||  | |||||||| || |||||||| || ||||||||||| ||||| ||||||||||||||||  |  | | || | | || |||   | |||   ||    |||  | |  ||       ||    |  |||  || |   |  ||||  |      
CGAAAGCTTGCGCAAAGATCAGAGAGAGTAAAGTCTGTGGATCTACATCCAACAGAACCATGgtaatgccttatccttggttgtgttttgtgattttatcactagaattattttaatatatgaagctaaatttataaccacctttataatttgttgctcatt

upper sequence: AT1G52360.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA08G22140.1 (Glycine max), 5'ss of exon 3
AGAAAATTAGCGCAAAGGTCTGAGAGAGTTAAATCTGTGGATCTTCATCCTACAGAACCATGgtaatttca-agctttcgctttgctttcatacttttgtaccgttatt--tctgctactaacgactgggatggtaaaaacat---tggtttgcag------
 ||||  | || ||||| || |||||||| || ||||||||||| ||||| ||||||||||||||||  |  | | || | | ||||||   | |||   || |  |||  | |   |      |||    |  |||  |  |   |  ||||| |      
CGAAAGCTTGCCCAAAGATCAGAGAGAGTAAAGTCTGTGGATCTACATCCAACAGAACCATGgtaatgccttatccttggttgtgctttgtgattttatcactggaattattttaagatatgaaactaaatttataaccagctttataatttgctgctcatt

upper sequence: AT1G52360.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv09s0002g04810.t01 (Vitis vinifera), 5'ss of exon 3
AGAAAATTAGCGCAAAGGTCTGAGAGAGTTAAATCTGTGGATCTTCATCCTACAGAACCATGgtaatttcaa---gctttcgctttgctttcatactttt-gtaccgttatttctgctactaacgactgggatggtaaaaacattggtttgcag----------
|| ||| | |||||||| || |||||||| |||||||||||||| |||||  | || |||||||||||  ||   | ||   | |   ||   ||||||| ||  |    |||||   |||   || | |||    | |   |   |||||| |          
AGGAAACTCGCGCAAAGATCAGAGAGAGTAAAATCTGTGGATCTGCATCCATCTGAGCCATGgtaattataatatgtttggccataatttatgtactttttgtttcaaattttctctgact--tgaataggaaatgagacttagatgtttgctggccattgtgg

upper sequence: AT1G52360.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv11s0016g04180.t01 (Vitis vinifera), 5'ss of exon 3
AGAAAATTAGCGCAAAGGTCTGAGAGAGTTAAATCTGTGGATCTTCATCCTACAGAACCATGgtaatttcaagctttcgctttgctttcatacttttgtaccgttatttctgctactaacgactgggatggtaaaaacattggtttgcag---------------------------------------------
|||||| | || ||||| ||||| ||||| ||||| |||||||| ||||| || |||||||||||||||       ||   ||   ||| |   ||||      | |  ||      ||  | |   | | |  |    |  | ||  ||                                             
AGAAAACTTGCACAAAGATCTGAAAGAGTAAAATCAGTGGATCTACATCCAACTGAACCATGgtaatttt----cctcatcttcacttcgttaatttgagtttgtctcccttaggtcaaaaaatataacgctgcatttttaagcttttagacaatgtttatagaaaattttgcaattacaagatgctgcatgcag

upper sequence: AT1G52360.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: PP1S243_63V6.1 (Physcomitrella patens), 5'ss of exon 3
AGAAAATTAGCGCAAAGGTCTGAGAGAGTTAAATCTGTGGATCTTCATCCTACAGAACCATGgtaa-----tttcaagctt----tcgctttgctttcatacttttgtaccg-ttatttctgctactaacgac--tgggatggtaaaaacattggtttgcag
 | ||| | || |||||||||||  |||| || | |||||| |||||||| |||||||||||||||      ||||||  |    |   |  | |||  ||  ||| |     |||     | |  |  |  |  |    |  |       ||| ||||   
CGGAAACTCGCCCAAAGGTCTGAACGAGTGAAGTGTGTGGACCTTCATCCAACAGAACCATGgtaaagcctcttcaagactgatataagtcgggttttgtatatttctcgaacttaaaatggttgtttgcatccttcaattttttgtgtttttgatttgtga

upper sequence: AT1G52360.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: PP1S79_180V6.1 (Physcomitrella patens), 5'ss of exon 3
AGAAAATTAGCGCAAAGGTCTGAGAGAGTTAAATCTGTGGATCTTCATCCTACAGAACCATGgtaatttcaagctttcgctttgctttcatacttttgtaccgttatttctgctactaacgactgggatggtaaaaacattggtttgcag-----------------------------------------------------------------------------------------------------------
 | ||| | ||||||||||||||| ||||||| | ||||||||||||||| ||||| |||||||||  ||    |  ||   | |   |  | | |       ||   | || | | ||    || ||   || |  |   |  |    |                                                                                                           
CGGAAACTCGCGCAAAGGTCTGAGCGAGTTAAGTGTGTGGATCTTCATCCAACAGAGCCATGgtaacgtctctttaacgacgt-cagacgcaatctgcatttcttcactatgttgcaaagctttgagaatctacagtctgggactcatggcgggttctgtcgatgtgccttggaacttacatgcgtccatgttgtatgttggttggttcttgaacatgatgtttcagcaattgaggaatcttatgattgtcatgcag