Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATATATAGTTGATATGCAATCCATGGACTCCACAGTTTCAGAAATCAATCGTCTTAGGGATGAACAACTATACCTAAAGCTCGTTCACCTTGTTGAGGCgtaagtttcgcttcttggtagatattttttcctatgatgttttagacaaattgattttgagttcttatgcaaatttttttgcag

Basic information

species Arabidopsis thaliana
transcript AT1G52320.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G52320.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GRMZM2G178319_T01 (Zea mays), 5'ss of exon 3
GATATATAGTTGATATGCAATCCATGGACTCCACAGTTTCAGAAATCAATCGTCTTAGGGATGAACAACTATACCTAAAGCTCGTTCACCTTGTTGAGGCgtaagtttcgcttcttggtagat-attttttcctatgatgttttagacaaa--ttg---attttgagttcttatgcaa---atttttttgcag-------
| || || || || |||||||||||||| || |||||||||||||| ||||| ||| |||||  |||  ||| || |||| |  |  |||||||||| | || ||| |   ||      |  | ||| | |  |||  |  ||    || |  |||   |  ||   |||   || ||   ||| |||  | |       
GGTACATTGTAGACATGCAATCCATGGATTCAACAGTTTCAGAAATAAATCGGCTTCGGGATAGACAGTTATTCCCAAAGTTAATGGACCTTGTTGATGGgtgagtattcttttgcaacaattgattctcttatattttaattgtagcataccttgtgtacatttcattcaattgtaatggattgtttgtctgttacctt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116415122|gb|EG457714.1|EG457714
EST:     CGTCTTAGGGATGAACAACTATACCTAAAGCTCGTTCACCTTGTTGAGGC                         GATGGGGAAGATGTGGGAAATGATGCAAATACATCATCAAAGACAAGCTGA
genomic: CGTCTTAGGGATGAACAACTATACCTAAAGCTCGTTCACCTTGTTGAGGCgtaagtttcg ... ttttttgcagGATGGGGAAGATGTGGGAAATGATGCAAATACATCATCAAAGACAAGCTGA