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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCTTGCAACGTTTTTGTACAGAACATAAGATTAAACTATCAAAGgtaagtttcctctgttttctctttgtatgtgtgatgaggtgagttttaattttgatgatttggtgaattttttttttacag

Basic information

species Arabidopsis thaliana
transcript AT1G52160.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G52160.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GRMZM2G379286_T01 (Zea mays), 5'ss of exon 3
GGCTTGCAACGTTTTTGTACAGAACATAAGATTAAACTATCAAAGgtaagtt-tcctctgtttt---ctctttgtatgtgtgatgaggtgagttttaattttgatgatttggtgaattttttttttacag--------------------------------------
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GGTCTTCAACGTTTCTGTACTGAACACAAGATAAAACTATCAAAGgtatgttattcgaagtttcgaactccctccaccatggataatctgtttttgaatttc--ttacatcctaatcttatactgtaaaaatactaacttgcttacgaaacaatctctcgcttcccag