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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCAGTGGAACCAGAAGAGAGCTTGAAGAAGCTGATTATCCACTGAGGCATCCAGAGTTTCGTTATAAAACAGAGTTTCAGAGTCATGACCCTGAGgtatttgatttactctgttttcttcttactcagctatttggctataccttttatctgtcttttcatgctctatccttgtttaccag

Basic information

species Arabidopsis thaliana
transcript AT1G51690.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G51690.3 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: LOC_Os06g36770.1 (Oryza sativa), 5'ss of exon 3
AGCAGTGGAACCAGAAGAGAGCTTGAAGAAGCTGATTATCCACTG---AGGCATCCAGAGTTTCGTTATAAAACAGAGTTTCAGAGTCATGACCCTGAGgtat-ttgatttactctgttttcttcttactcagctatttggctataccttttatctgtcttttcatgctctatccttgtttaccag-------------
   | ||  |   | |||||  | ||   |   |||  |||  |    || || ||||||||||| || ||||  || |||||||||||||| |||||||||| |||||   ||   ||  ||  |    ||  || |    | |    |||   ||   ||  | ||   |       ||| ||              
---AATGCCAGTCGGAGAGAAATGGAGAGACAAGATGCTCCGATTACTAGACACCCAGAGTTTCGCTACAAAAGTGAATTTCAGAGTCATGAACCTGAGgtatgttgataatctggattggctgttgtagcacatagtattatctgttatttccatgaagttggacgcataagatcaaattaacaagctggcattctta

upper sequence: AT1G51690.3 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM2G069631_T02 (Zea mays), 5'ss of exon 3
AGCAGTGGAACCAGAAGAGAGCTTGAAGAAGCTGATTATCCACTG---AGGCATCCAGAGTTTCGTTATAAAACAGAGTTTCAGAGTCATGACCCTGAGgtatttga---tttactctgttttcttcttact-cagctatttggctataccttttatctgtcttttcatg-ctctatccttgtttaccag---------
   | ||      || |||| |||||       || ||||   |    |||||||| ||||| ||||| || || || |||||||||||||| |||||||||  ||    || | |  |   |   |  |    | | |||||   ||   | | |  || ||| |  || ||    |  ||      |          
---AATGCTTGTCGAGGAGAACTTGAGAGGCAAGAATATCTTGTTTCTAGGCATCCTGAGTTCCGTTACAAGACCGAATTTCAGAGTCATGAACCTGAGgtacgtgggtcttaaattggcgatagaccgatagtaacaatttgttcatgagtgtcaattgacttcttgtgactgaggcactgagccatatctagcttgg

upper sequence: AT1G51690.3 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA07G01440.1 (Glycine max), 5'ss of exon 3
AGCAGTGGAACCAGAAGAGAGCTTGAAGAAGCTGATTAT-CCACTG--AGGCATCCAGAGTTTCGTTATAAAACAGAGTTTCAGAGTCATGACCCTGAGgtatttgatttactctgttttcttcttactcagctatttggctataccttttatctgtcttttcatgctctatccttgtt-taccag
      ||| | ||||| ||  | ||       || ||| | | |   || ||||| ||||| ||||||||||||||||||||||||||||| ||||||||| ||      | ||| ||  | ||  |  |  |  |||  |  | |    ||||     || |||   | |  ||||| |  |||
CATCACGGATCAAGAAGGGACTTGGAGAGGATGGACTATTCTATTAGTAGACATCCTGAGTTCCGTTATAAAACAGAGTTTCAGAGTCATGAGCCTGAGgtaattttcagtcactggttaatgctgcccgaaatgcttg--tggagcagaaatcttaacatttatgacttgtgattgttgtttcag

upper sequence: AT1G51690.3 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA08G20830.4 (Glycine max), 5'ss of exon 3
AGCAGTGGAACCAGAAGAGAGCTTGAAGAAGCTGATTAT-CCACTG--AGGCATCCAGAGTTTCGTTATAAAACAGAGTTTCAGAGTCATGACCCTGAGgtatttgatttactctgttttcttcttactcagctatttggctataccttttatctgtcttttcatgctctatccttgtt-taccag
    | ||| | ||||| ||  | ||       || ||| | | |   || ||||| ||||| ||||||||||||||||||||||||||||| ||||||||| ||      | ||| ||  | ||  || |  |  |||  |  | |    || |     || |||   | |  ||||| |  |||
CATTGCGGATCAAGAAGGGACTTGGAGAGGATGGACTATTCTATTAGTAGACATCCTGAGTTCCGTTATAAAACAGAGTTTCAGAGTCATGAGCCTGAGgtaattttcagtcactggttaatgctgcctgaaatgcttg--tggagcagaaatgttaacatttatgacatgtgattgttgtttcag

upper sequence: AT1G51690.3 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA15G02640.1 (Glycine max), 5'ss of exon 3
AGCAGTGGAACCAGAAGAGAGCTTGAAGAAGCTGATTAT-CCACTG--AGGCATCCAGAGTTTCGTTATAAAACAGAGTTTCAGAGTCATGACCCTGAGgtatttg--atttactctgttttctt-cttactcagctatttggctataccttttatctgtcttttcatgctctatccttgtttaccag
    ||||| | ||||| ||  | ||       || ||| | | ||  |||||||| ||||| ||||| ||||||||||||||||||||||| || |||||| |    ||||  || ||  | || |     || |   | ||  | |    | |  | | | |  |||    ||| ||||||  |||
CATGGTGGATCAAGAAGGGATTTGGAGAGGATGGACTATTCTATTGGTAGGCATCCTGAGTTCCGTTACAAAACAGAGTTTCAGAGTCATGAGCCAGAGgtaatcatcatttggtcagtaatgttgcaccaacatcctatgggtcagaagagtcaa-tatttataaatgtatgatcattgttt--cag

upper sequence: AT1G51690.3 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA13G42800.1 (Glycine max), 5'ss of exon 3
AGCAGTGGAACCAGAAGAGAGCTTGAAGAAGCTGATTAT-CCACTG--AGGCATCCAGAGTTTCGTTATAAAACAGAGTTTCAGAGTCATGACCCTGAGgtatttg--atttactctgttttctt-cttactcagctatttggctataccttttatctgtcttttcatgctctatccttgtttaccag
    ||||| | || || ||  | ||    |  || ||| | | ||  |||||||| ||||| ||||| |||||||||||||||||||| || || |||||| |    ||||  || ||  | || |     || |   | ||  | |    | |      || | |||    ||| ||||||  |||
CATGGTGGATCAAGTAGGGATTTGGAGAGGGTGGACTATTCTATTGGTAGGCATCCTGAGTTCCGTTACAAAACAGAGTTTCAGAGTCACGAACCAGAGgtaatcatcatttggtcagtaatgttgcaccaacatcctatgggtcagaagagtcaata--tttataatgtatgatcattgttt--cag

upper sequence: AT1G51690.3 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv09s0002g02470.t01 (Vitis vinifera), 5'ss of exon 3
AGCAGTGGAACCAGAAGAGAGCTTGAAGAAGCTGATTATCCACTGAGGCATCCAGAGTTTCGTTATAAAACAGAGTTTCAGAGTCATGACCCTGAGgtatttgatttactctgttttcttcttactcagctatttggctataccttttatctgtcttttcatgctctatccttgtt--taccag----------------------
    | ||| | ||||| || |||||       || || ||| | |||||||| || |||||||||||||| ||||||||||| ||||| ||||||||||||  || | || |||            || |  || ||   ||| |||             ||   | |  |  ||  | |||                       
CATGGAGGATCAAGAAGGGATCTTGAGAGGATGGACTACCCAATTAGGCATCCCGAATTTCGTTATAAAACTGAGTTTCAGAGCCATGAACCTGAGgtatttctttca-tcagttactcctgcctgaagtttgtttgcaccaccctttgctcactaggctctgaaatgttttaattgatgccacattgcttattctctgtgctcag