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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAATACCTTCTGATCTTAACAGAGATGAGTGGGTTGCTGCACTTCCTAGGGCTTTGGTTGCAGGATTTGTGAAAACTGATAAAGATTTCCAGGAAAGAGgtatgaacttatcaatgaaaaaccttgtgatgtgattcaagtcccaagagggtgaactcgtctgtgtctttatattcttatatcattctggtgaaggctatgtttgaggttttattgttttcttgcatttcag

Basic information

species Arabidopsis thaliana
transcript AT1G47380.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G47380.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: LOC_Os02g35910.1 (Oryza sativa), 5'ss of exon 2
GCAATACCTTCTGATCTTAACAGAGATGAGTGGGTTGCTGCACTTCCTAGGGCTTTGGTTGCAGGATTTGTGAAAACTGATAAAGATTTCCAGGAAAGAGgtatgaacttatcaatgaaaaaccttgtga--tgtgattcaagtcccaagagggtgaactcgtctgtgtctttatattcttatatcattctggtgaaggctatgtttgaggttttattgttttcttgcatttcag
||||| ||  ||||||| ||||| || || ||| |||| || ||||| || ||  ||||||||| |||||| ||||||||||||||||||||    | ||||  |    |    || |  | ||| |||   || | | ||| |  |  | ||    || |            |||     || |  |  | |  ||  ||||    ||                          
GCAATCCCAGCTGATCTCAACAGGGAGGATTGGCTTGCCGCGCTTCCGAGAGCGATGGTTGCAGCATTTGTCAAAACTGATAAAGATTTCCAAACGAAAGgtgcg----tgaggataaccagcctggtgggttgaggtgcaattttcgtgtggcgccacaca---aaaaaccaataagggaatcttttgtttgctaa--ctataagcga--------------------------

upper sequence: AT1G47380.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA06G04210.1 (Glycine max), 5'ss of exon 2
GCAATACCTTCTGATCTTAACAGAGATGAGTGGGTTGCTGCACTTCCTAGGGCTTTGGTTGCAGGATTTGTGAAAACTGATAAAGATTTCCAGGAAAGAGgtatgaacttatcaatgaaaaaccttgtgatgtg-attcaagtcccaagagggtgaactcgtctgtgtctttatattcttatatcattctggtgaaggctatgtttgaggttttattgttttcttgcatttcag
||||| ||||||||||||||||||||||||||||| || ||  | |||||||||||||||||||| ||||| ||||||||||||||||| || || | |||||| ||||  | | |      ||||||  |||   |||  | | | |     |  | | | |  ||     |  || |    || |||||| ||     ||  |                             
GCAATTCCTTCTGATCTTAACAGAGATGAGTGGGTAGCAGCGTTGCCTAGGGCTTTGGTTGCAGGCTTTGTAAAAACTGATAAAGATTTTCAAGAGAAAGgtat-aactagttactt-----ccttgtagtgtttgttcttgcctctattaatt--attaggccatgaggcaaagttatgtgttccttctgg-gatcttcatagtaata-------------------------

upper sequence: AT1G47380.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA04G04040.1 (Glycine max), 5'ss of exon 2
GCAATACCTTCTGATCTTAACAGAGATGAGTGGGTTGCTGCACTTCCTAGGGCTTTGGTTGCAGGATTTGTGAAAACTGATAAAGATTTCCAGGAAAGAGgtatgaacttatcaatgaaaaaccttgtgatgtg-attcaagtcccaagagggtgaactcgtctgtgtctttatattcttatatcattctggtgaaggctatgtttgaggttttattgttttcttgcatttcag
||||| ||||||||||||||||||||||||||||| || ||  | |||||||||||||||||||| ||||| ||||||||||| ||||| || || | |||||| ||||  | |||      ||||||  |||   |||  | | | |     |  | | | ||  |     | |||| | |||  | |   || |    || ||    ||  ||                   
GCAATTCCTTCTGATCTTAACAGAGATGAGTGGGTAGCAGCGTTGCCTAGGGCTTTGGTTGCAGGCTTTGTAAAAACTGATAAGGATTTTCAAGAGAAAGgtat-aactagttaatt-----ccttgtagtgtttgttcttgcctctattaatt--attaggctacgaggaaa-attcatgtat--tccatctgga----atcttcatagtaata-------------------

upper sequence: AT1G47380.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA14G09020.1 (Glycine max), 5'ss of exon 3
GCAATACCTTCTGATCTTAACAGAGATGAGTGGGTTGCTGCACTTCCTAGGGCTTTGGTTGCAGGATTTGTGAAAACTGATAAAGATTTCCAGGAAAGAGgtatgaacttatcaatgaaaaaccttgtgatgtgattcaagtcccaagagggtgaactcgtctgtgtctttatattcttatatcattctggtgaaggctatgtttgaggttttattgttttcttgcatttcag
|  || ||| | ||||||||||||||||||||| | || ||| | ||||||||||||||||| || ||||| ||||||||||||||||| || || | ||||||| |    ||| |      |||| || |||  ||   |  |             ||||||||   ||| |  | | | |     ||  || |  | |   || |   || ||     | |          
GTGATTCCTCCCGATCTTAACAGAGATGAGTGGATAGCAGCATTGCCTAGGGCTTTGGTTGCTGGCTTTGTAAAAACTGATAAAGATTTTCAAGAGAAAGgtatggatagttcatt------ccttttggtgt--tt---gctctg-----------tcgtctgttaattttttgtttaagagggaactcatgcaaacca-acttaaatcttcatgtcaatat----------

upper sequence: AT1G47380.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA17G36150.2 (Glycine max), 5'ss of exon 2
GCAATACCTTCTGATCTTAACAGAGATGAGTGGGTTGCTGCACTTCCTAGGGCTTTGGTTGCAGGATTTGTGAAAACTGATAAAGATTTCCAGGAAAGAGgtatgaac---ttatcaatgaaaaaccttgtgatgt-gattcaagtcccaagagggtgaactcgtctgtgtctttatattcttatatcattctggtgaaggctatgtttgaggttttattgttttcttgcatttcag
|| || ||| | ||||||||||||||||||||| | || ||  | || |||||||||||||| || ||||| ||||||||||||||||| || || | ||||||| |    | ||   |        |||   |||  |||        | || ||    |  ||   |    ||| ||  | || ||| | |    ||                                      
GCGATTCCTCCAGATCTTAACAGAGATGAGTGGATAGCAGCCTTGCCCAGGGCTTTGGTTGCTGGTTTTGTAAAAACTGATAAAGATTTTCAAGAGAAAGgtatggatagttcattccttttggtgtttgctctgtcaattttttgtttacgatggaattcatgtacattaacttaaatcttcatgtcaatatcaccaaa-------------------------------------

upper sequence: AT1G47380.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA10G14750.1 (Glycine max), 5'ss of exon 3
GCAATACCTTCTGATCTTAACAGAGATGAGTGGGTTGCTGCACTTCCTAGGGCTTTGGTTGCAGGATTTGTGAAAACTGATAAAGATTTCCAGGAAAGAGgtatg---aacttatcaatgaaaaaccttgtgatgtgattcaagtcccaagagggtgaactcgtctgtgtc--tttatattcttatatcattctggtgaaggctatgtttgaggttttattgttttcttgcatttcag
|| || ||| |  |||||||||||||||||||| | ||  || | || |||||||||||||  ||  |||| ||||||||||||||||| || || | |||| ||   || | ||   |        |||   ||| | |    |    |   || ||| || | |   ||   ||| ||  | || ||| | |    ||                                      
GCGATTCCTCCATATCTTAACAGAGATGAGTGGATAGCAACATTGCCCAGGGCTTTGGTTGATGGCCTTGTAAAAACTGATAAAGATTTTCAAGAGAAAGgtttggataattcattccttttggtgtttgctctgtcaattttttgtttacgagg-gaattcatgtacatcaacttaaatcttcatgtcaatatcaccaaa-------------------------------------

upper sequence: AT1G47380.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv18s0001g10700.t01 (Vitis vinifera), 5'ss of exon 3
GCAATACCTTCTGATCTTAACAGAGATGAGTGGGTTGCTGCACTTCCTAGGGCTTTGGTTGCAGGATTTGTGAAAACTGATAAAGATTTCCAGGAAAGAGgtatgaac--ttatcaatgaaaaaccttgtgatgtgattcaagtcccaagagggtgaactcgtctgtgtctttatattcttatatcattctggtgaaggctatgtttgaggttttattgttttcttgcatttcag
|| || ||| | || |||| ||||||||||||||| |||||  | |||||||||||||||||||| ||||| || || |||| ||||||||| || | |||||||||   || |||  | ||    |  | ||||    || ||   |           | |||    |    | ||  | |||| | ||   | |   | |                                 
GCTATTCCTCCAGAACTTAGCAGAGATGAGTGGGTAGCTGCCTTACCTAGGGCTTTGGTTGCAGGGTTTGTTAAGACAGATATAGATTTCCAAGAGAAAGgtatgaataattttcatggtaacttgtactaatgtagcacatgtagtatagttaccccatggtccaaatagggaaatg-tcatataactc-aattagaacca---------------------------------