Sequence
atgc intronic sequence ATGC exonic sequenceTGATGTACTTAATCCTCTAGCTCGTGAGTACAAGTCCATCGGTACAGTGAAGAAAGAACTAGCTGGATTGCAGGAAGAATTATCGAAAGCACACCAACAGgtttttaacaatgctattcactgagaatgattagtttttttatgagacttcctctaactcttagttgaaatgaaacag
Basic information
species | Arabidopsis thaliana |
transcript | AT1G44446.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT1G44446.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA06G11920.1 (Glycine max), 5'ss of exon 3
TGATGTACTTAATCCTCTAGCTCGTGAGTACAAGTCCATCGGTACAGTGAAGAAAGAACTAGCTGGATTGCAGGAAGAATTATCGAAAGCACACCAACAGgtttttaacaatgctattcactgag-aatgattagttttttta--tgagacttcctctaactctt-agttgaaatgaaacag---------------------------------------------------
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GGAGGTTCTTAATCCTTTAGCTCGTGATTATAAGTCCATTGGCACCATGAAAAAGGAGCTAGCAGGGTTGCAGGAAGAATTGGCACTAGCACACCAACAGgtaccaatcattacatgttacgaactaatcagcacaacatgtagctgagattgtcttgatttgtccgacttggctggaacttgttcataaagttatcaatattcaattcatgttacttattgaacaaaaacag
upper sequence: AT1G44446.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA04G42840.1 (Glycine max), 5'ss of exon 3
TGATGTACTTAATCCTCTAGCTCGTGAGTACAAGTCCATCGGTACAGTGAAGAAAGAACTAGCTGGATTGCAGGAAGAATTATCGAAAGCACACCAACAGgtttttaacaatgc-tattcactgagaatgattagttttttta--tgagacttcctctaactcttagttgaaatgaaacag-------------------------------------------------------
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GGAGGTTCTTAATCCTTTAGCTCGTGATTATAAGTCCATTGGCACCATGAAAAAGGAGCTAGCAGAGTTGCAGGAAGAATTGGCACAAGCACACCAACAGgtactgatcattacatgttaataagtaatcagcacaacatgtagctgagatgtcttgattcgtccaacttgcctggaacttgttcataagttatcaatatgagactttattcatgttacttattgaacaaaaacag
upper sequence: AT1G44446.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA14G23860.1 (Glycine max), 5'ss of exon 3
TGATGTACTTAATCCTCTAGCTCGTGAGTACAAGTCCATCGGTACAGTGAAGAAAGAACTAGCTGGATTGCAGGAAGAATTATCGAAAGCACACCAACAGgt-------ttttaacaatgctattcactgagaatgatt--------agtttttttatgagacttcctctaactcttagttgaaatgaaacag--------------------------------------------------
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CGAAGTTCTTAATCCTCTAGCTCGTGAATATAAATCAATAGGCACCCTGAAAAAGGAACTAGCTGGGTTGCAGGATGAATTAGCACAAGCACACAGACAGgtatagaatttttagcagtgaagaccagtcagcacaacttgaaactgagttgtttttaattgatctatctaact--tggcagaaatttgtcaataggttattaacctgtcactatatttattcaacttaatgaataacaacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|125287798|gb|EL301883.1|EL301883EST: ATTGCAGGAAGAATTATCGAAAGCACACCAACAG GTTCATATATCTGAAGCAAGGGTTTCGACTGCTTTAGACAAGTTAGCCCAC
genomic: ATTGCAGGAAGAATTATCGAAAGCACACCAACAGgtttttaaca ... aatgaaacagGTTCATATATCTGAAGCAAGGGTTTCGACTGCTTTAGACAAGTTAGCCCAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGATGTACTTAATCCTCTAGCTCGTGAGTACAAGTCCATCGGTACAGTGAAGAAAGAACTAGCTGGATTGCAGGAAGAATTATCGAAAGCACACCAACAGgtttttaacaatgctattcactgagaatgattagtttttttatgagacttcctctaactcttagttgaaatgaaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA