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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAAAGACTTCTCTAACAACGTTTCCTGCATCCGCGGAGATTGTGTCTGAGCCTCTTGGTGTTGTGCTAGTGATCTCGGCTTGGAACTATCCTTTTCgtatgttccgatcactgattaagttttaactataagttatattacattttgtatgaagtgtgacacttttttttttttttgcaag

Basic information

species Arabidopsis thaliana
transcript AT1G44170.3
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G44170.3 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: LOC_Os11g08300.2 (Oryza sativa), 5'ss of exon 2
---GCAAAGACTTCTCTAACAACGTTTCCTGCATCCGCGGAGATTGTGTCTGAGCCTCTTGGTGTTGTGCTAGTGATCTCGGCTTGGAACTATCCTTTTCgtatgttccgatcactgattaagtttta-actataagttatat---tacattttgtatgaagtgtgacactttttttt-----ttttttgcaag------
   | |    |  | || || || || ||  || | ||  | |||||||| |||||||||||||| || ||||| ||||| || |||||||| |||||  ||| |||           | | |||| | |||   | ||  ||    ||  ||  |    || || |  || ||   |     ||  ||||||       
CAGGTACCTGCCGCCCTCACTACATTCCCATCAACTGCACAAATTGTGTCAGAGCCTCTTGGTGTCGTCCTAGTCATCTCAGCATGGAACTACCCTTTCTgtaagttaaatggtgcattcatgtttcatactcgtaattgcataaacaccgttattccatagagtaatgctattgagtagggattaattgcaatttttgg

upper sequence: AT1G44170.3 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: LOC_Os11g08300.1 (Oryza sativa), 5'ss of exon 3
GCAAAGACTTCTCTAACAACGTTTCCTGCATCCGCGGAGATTGTGTCTGAGCCTCTTGGTGTTGTGCTAGTGATCTCGGCTTGGAACTATCCTTTTCgtatgttccgatcactgattaagtttta-actataagttatat---tacattttgtatgaagtgtgacactttttttt-----ttttttgcaag------
| |    |  | || || || || ||  || | ||  | |||||||| |||||||||||||| || ||||| ||||| || |||||||| |||||  ||| |||           | | |||| | |||   | ||  ||    ||  ||  |    || || |  || ||   |     ||  ||||||       
GTACCTGCCGCCCTCACTACATTCCCATCAACTGCACAAATTGTGTCAGAGCCTCTTGGTGTCGTCCTAGTCATCTCAGCATGGAACTACCCTTTCTgtaagttaaatggtgcattcatgtttcatactcgtaattgcataaacaccgttattccatagagtaatgctattgagtagggattaattgcaatttttgg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116465911|gb|EG508503.1|EG508503
EST:     TGGTGTTGTGCTAGTGATCTCGGCTTGGAACTATCCTTTTC                         TGTTGTCTATTGATCCTGTTATTGGTGCAATTTCTGCTGGGAATGCTGTTG
genomic: TGGTGTTGTGCTAGTGATCTCGGCTTGGAACTATCCTTTTCgtatgttccg ... tttttgcaagTGTTGTCTATTGATCCTGTTATTGGTGCAATTTCTGCTGGGAATGCTGTTG
EST: gi|116465913|gb|EG508505.1|EG508505
EST:     TGTTGTGCTAGTGATCTCGGCTTGGAACTATCCTTTTC                         TGTTGTCTATTGATCCTGTTATTGGTGCAATTTCTGCTGGGAATGCTGTTG
genomic: TGTTGTGCTAGTGATCTCGGCTTGGAACTATCCTTTTCgtatgttccg ... tttttgcaagTGTTGTCTATTGATCCTGTTATTGGTGCAATTTCTGCTGGGAATGCTGTTG
EST: gi|116465916|gb|EG508508.1|EG508508
EST:     TGTTGTGCTAGTGATCTCGGCTTGGAACTATCCTTTTC                         TGTTGTCTATTGATCCTGTTATTGGTGCAATTTCTGCTGGGAATGCTGTTG
genomic: TGTTGTGCTAGTGATCTCGGCTTGGAACTATCCTTTTCgtatgttccg ... tttttgcaagTGTTGTCTATTGATCCTGTTATTGGTGCAATTTCTGCTGGGAATGCTGTTG
EST: gi|116465923|gb|EG508515.1|EG508515
EST:     TTGTGCTAGTGATCTCGGCTTGGAACTATCCTTTTC                         TGTTGTCTATTGATCCTGTTATTGGTGCAATTTCTGCTGGGAATGCTGTTG
genomic: TTGTGCTAGTGATCTCGGCTTGGAACTATCCTTTTCgtatgttccg ... tttttgcaagTGTTGTCTATTGATCCTGTTATTGGTGCAATTTCTGCTGGGAATGCTGTTG