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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTCCGTTTACGGAGCTTTTGAGATTTATTCTGTTTGCTAATTTCTCCATTGTTGGAATGAATGTCAGTCTTATGTGGAACTCTGTTGGTTTTTATCAGgtattagacatcatctagctctgtaattgtgaaaagaaatgtattgctgattttatgattgtcctgtttttgcttgtcag

Basic information

species Arabidopsis thaliana
transcript AT1G34020.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G34020.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: LOC_Os12g05780.3 (Oryza sativa), 5'ss of exon 3
TCTTCCGTTTACGGAGCTTTTGAGATTTATTCTGTTTGCTAATTTCTCCATTGTTGGAATGAATGTCAGTCTTATGTGGAACTCTGTTGGTTTTTATCAGgt--attagacatcat-ctagct-ctgtaattgtgaaaagaaatgtattgctgattttatgattgtcctgtttttgcttgtcag
  | ||  |  | || ||  | |  ||| |  | ||| | || || || ||||||||||||||||| ||  | |||||||||||||| || |||||||||||     |   | | | ||||   ||  | |     |  |   |  | |    | |     |   |||| ||| | |   ||||
CTTACCAATACCAGATCTGATTAAGTTTGTGATCTTTTCGAACTTGTCAATTGTTGGAATGAATGTGAGCTTGATGTGGAACTCTGTGGGATTTTATCAGgttagcaaaggaccgttctagtagctagattccatcatggctttaaactttcaactactaaacaatcctttttcttcccttcag

upper sequence: AT1G34020.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: LOC_Os02g40090.4 (Oryza sativa), 5'ss of exon 3
TCTTCCGTTTACGGAGCTTTTGAGATTTATTCTGTTTGCTAATTTCTCCATTGTTGGAATGAATGTCAGTCTTATGTGGAACTCTGTTGGTTTTTATCAGgtattagacatcatct--agctctgtaattgtgaaaagaaatgtattgctgattttatgattgtcctgtttttgcttgtcag
| | || ||  | || ||  | | |||  |  | ||||| || || || |||||||| |||||||| ||| | ||||||||||||||||| || ||||||||   |    | || |  |   ||   ||  | ||    |   |   |   |  |  | ||| || | |  |  ||  ||||
TTTACCATTGCCAGAACTCGTTAAATTCGTCTTTTTTGCAAACTTATCAATTGTTGGGATGAATGTTAGTTTGATGTGGAACTCTGTTGGATTCTATCAGgtgggaagagtaattttaaatccttctatattcaatgttagaatggagggcacatactaattttcgtttcatgcctcttcag

upper sequence: AT1G34020.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: LOC_Os12g05830.1 (Oryza sativa), 5'ss of exon 3
TCTTCCGTTTACGGAGCTTTTGAGATTTATTCTGTTTGCTAATTTCTCCATTGTTGGAATGAATGTCAGTCTTATGTGGAACTCTGTTGGTTTTTATCAGgt--attagacatcatctagctctgtaattgtgaaaagaaatgta---ttgctgatttta-----tgattgtcctgtttttgcttgtcag
  | ||  |  | || ||  | | |||| |  | ||| | || || || ||||||||||||||||| ||  | |||||||||||||| || |||||||||||     |   ||  |   |||   ||| |   |  |    | |    || |   ||| |     | |     |  ||| | ||  ||||
CTTACCACTGCCAGATCTGATTAAATTTGTGATCTTTTCGAACTTGTCGATTGTTGGAATGAATGTGAGCTTGATGTGGAACTCTGTGGGGTTTTATCAGgttagcaaaggatggttctgctagctaaattccatcatggctttgaactttcaagtttcaaaagctaaagaatccttttgttctcttcag

upper sequence: AT1G34020.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: LOC_Os05g12490.1 (Oryza sativa), 5'ss of exon 3
TCTTCCGTTTACGGAGCTTTTGAGATTTATTCTGTTTGCTAATTTCTCCATTGTTGGAATGAATGTCAGTCTTATGTGGAACTCTGTTGGTTTTTATCAGgtattagacatcatctagctctgtaattgtga---aaagaaatgtattgctgattttatgattgtcctgtttttgcttgtcag
  | ||  |  | || ||  | | |||| |  | ||||| ||  | || |||||||| |||||||| ||| | ||||||||||||||||| || || |||||     |  | |   ||  || ||||  | |     |||| || || ||  ||  ||   |||  |    |    || ||||
CTTACCAGTGCCAGAACTAATAAAATTTGTCTTTTTTGCAAACCTATCAATTGTTGGGATGAATGTTAGTTTGATGTGGAACTCTGTTGGATTCTACCAGgtgaagaaagtaactaagtcctttaatgttcacttttagaattggat-gcatatacta-atttgctcctcatgcctttttcag

upper sequence: AT1G34020.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GRMZM2G147446_T01 (Zea mays), 5'ss of exon 3
TCTTCCGTTTACGGAGCTTTTGAGATTTATTCTGTTTGCTAATTTCTCCATTGTTGGAATGAATGTCAGTCTTATGTGGAACTCTGTTGGTTTTTATCAGgtattagacatcatctagct-ctgtaattgtgaaaagaaatgtattgctgat-tttatgattgtcctgtttttgcttgtcag
  | ||  |  | || ||  | | |||| |  | ||| | || || || |||||||| |||||||| ||  | ||||||||||||||||| |||||||||||    || ||  | |||   |||  ||  |         || || | | |  | |||  |  |  | ||     |  ||||
CTTACCCCTAGCAGATCTAGTTAAATTTGTGATATTTTCGAACTTGTCAATTGTTGGGATGAATGTGAGCTTGATGTGGAACTCTGTTGGCTTTTATCAGgttggtgagattttttagtagctgctatattatgcgaccttgaatcgttaacatctatattcattttattccc-ttgctcag

upper sequence: AT1G34020.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GRMZM2G071378_T02 (Zea mays), 5'ss of exon 3
TCTTCCGTTTACGGAGCTTTTGAGATTTATTCTGTTTGCTAATTTCTCCATTGTTGGAATGAATGTCAGTCTTATGTGGAACTCTGTTGGTTTTTATCAGgtattagacatcatctagctctgtaattgtgaaaagaaatgtattgctgattttatgattgtcctgtttttgcttg-tcag
  | ||  |  | || ||  | | |||| |  | ||| | || || || |||||||| |||||||| ||  | |||||||||||||| || |||||||||||    || ||  |      |||  ||  |    |    |  |||| | |     ||| |    | | ||  |||| ||||
CTTACCCCTAGCAGATCTAGTTAAATTTGTGATATTTTCGAACTTGTCAATTGTTGGGATGAATGTGAGCTTGATGTGGAACTCTGTGGGCTTTTATCAGgttggtgaaatttttagtagctgctataatatgcaaccttaaattgttaacaac-tgaattcattctattcccttgctcag

upper sequence: AT1G34020.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GRMZM2G089630_T04 (Zea mays), 5'ss of exon 3
TCTTCCGTTTACGGAGCTTTTGAGATTTATTCTGTTTGCTAATTTCTCCATTGTTGGAATGAATGTCAGTCTTATGTGGAACTCTGTTGGTTTTTATCAGgtat---tagacatcatctagctctgtaattgt---gaaaagaaatgtat-tgctgattttatgattgtcctgtttttgcttgtcag
||| |||||  | || ||  | | |||     | ||||| ||  | || |||||||| |||||||| ||  | ||||||||||||||||| || ||||||||      ||| |         ||| ||| | |   | ||  |||  | | | ||||   | |   |||| ||  |||    |    
TCTACCGTTACCTGAACTAGTAAAATTCGCCTTTTTTGCGAACCTGTCTATTGTTGGGATGAATGTAAGCTTGATGTGGAACTCTGTTGGATTCTATCAGgtgcagacagaaacttcgatattctataagtatatcggaattaaacttgtatactgacgctgt--ctgtcttgcctttttcag----

upper sequence: AT1G34020.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA10G36620.1 (Glycine max), 5'ss of exon 2
TCTTCCGTTTACGGAGCTTTTGAGATTTATTCTGTTTGCTAATTTCTCCATTGTTGGAATGAATGTCAGTCTTATGTGGAACTCTGTTGGTTTTTATCAGgt-attagacatcatctagctctgtaattgtgaaa---agaaatgtattgctgattttatgattgtcctgtttttgcttgtcag
| | || ||  | |||||| | | |||| || | |||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||| || ||||| || | | |   | |  |  | || |   |   |     |  |||| ||| | ||  |||  ||| || | ||     ||| |||
TTTACCCTTACCAGAGCTTCTAAAATTTGTTTTCTTTGCTAACTTCTCCATTGTTGGAATGAATGTCAGTCTAATGTGGAACTCAGTTGGATTCTATCAAgtgagttgtattgaattttcactattggtccaaggtccattaatgcatt-cagaagtta-aattttcttcttaaccattggcag

upper sequence: AT1G34020.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA02G08700.1 (Glycine max), 5'ss of exon 3
TCTTCCGTTTACGGAGCTTTTGAGATTTATTCTGTTTGCTAATTTCTCCATTGTTGGAATGAATGTCAGTCTTATGTGGAACTCTGTTGGTTTTTATCAGgt-attagacatcatctagctctgtaattgtgaaaagaaatgtattgctgattttatgattgtcctgtttttgcttgtcag
| | || ||  | || ||| | | |||| |||| |||||||| ||||| ||||||||||||||||| ||||| ||||||||||| ||||| || ||||| || | | |   | | ||   ||| |   |      |  ||||  || | ||  |||| |||  | | ||     ||| |||
TTTACCCTTGCCAGATCTTCTAAAATTTGTTCTCTTTGCTAACTTCTCTATTGTTGGAATGAATGTTAGTCTAATGTGGAACTCAGTTGGATTCTATCAAgtgagttgggctgagctttatctattggttaattcattaatgcctt-cagaagttat-attcactttttagccattgacag

upper sequence: AT1G34020.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA16G27820.1 (Glycine max), 5'ss of exon 2
TCTTCCGTTTACGGAGCTTTTGAGATTTATTCTGTTTGCTAATTTCTCCATTGTTGGAATGAATGTCAGTCTTATGTGGAACTCTGTTGGTTTTTATCAGgt-attagacatcatctagctctgtaattgtgaaaagaaatgtattgctgattttatgattgtcctgtttttgcttgtcag
| | || ||  | || ||| | | |||| ||||  ||||||| ||||| ||||||||||||||||| ||||| ||||||||||| ||||| || ||||| || | | |   | | ||   ||| |   |      |  ||||  || | ||  |||  |||  | | ||     ||| |||
TTTACCCTTGCCAGATCTTCTAAAATTTGTTCTCGTTGCTAACTTCTCTATTGTTGGAATGAATGTTAGTCTAATGTGGAACTCAGTTGGATTCTATCAAgtgagttgggctgagctttatctattggttcattcactaatgcctt-cagaagttaatattcactttttagccattgacag

upper sequence: AT1G34020.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv18s0072g00080.t01 (Vitis vinifera), 5'ss of exon 2
TCTTCCGTTTACGGAGCTTTTGAGATTTATTCTGTTTGCTAATTTCTCCATTGTTGGAATGAATGTCAGTCTTATGTGGAACTCTGTTGGTTTTTATCAGgtat--tagacatcatctagctctgtaattgtgaaaagaaatgtattgctgattttatgattgtcctgtttttgcttgtcag
||| ||  || | |||||| ||| |||| |  | ||||| || ||||| ||||||||||||||||| ||| | ||||||||||| || || || ||||||||||  |     |  |||   | | |||   |  |    | |||| |  |      |      ||     |||   ||||||
TCTCCCCCTTCCAGAGCTTCTGAAATTTGTATTATTTGCGAACTTCTCTATTGTTGGAATGAATGTTAGTTTAATGTGGAACTCAGTAGGGTTCTATCAGgtatattctgattgctctgtgtgtttaagcttacattttattgtaataattgcagaagttacatctctaatttaactgtcag