1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GTTCATATACTTGTTCATTGGTATTGGTGTGGCTCTCTTTGTTATTTCTTGCTGTGGCTGTGTTGGTACTTGTTCGAGGAGTGTCTGCTGCTTATCTTGCgtatcctaattacttaacttgcttttcttatccaacatttcctgttagataaatactgccttgacctttagttatatgctcaggttattggtatctttgcttagttatgataggatccttaagcaaactaaaagtcttaacctttcatttccttaattgagaatag
species | Arabidopsis thaliana |
transcript | AT1G32400.2 |
intron # | 3 |
splice site | 5' |
intron type | U12 (go to U12 genes for details) |
EST: GTTCGAGGAGTGTCTGCTGCTTATCTTGC TACTCTCTTCTTCTGATCTTGTTGATCTTGGTGGAGCTTGGATTCCCAGCAEST: gi|164147297|gb|ES144557.1|ES144557
genomic: GTTCGAGGAGTGTCTGCTGCTTATCTTGCgtatcctaat ... ttgagaatagTACTCTCTTCTTCTGATCTTGTTGATCTTGGTGGAGCTTGGATTCGCAGCA
EST: GCTGTGGCTGTGTTGGTACTTGTTCGAGGAGCGTCTGCTGCTTATCTTGC TACTCTCTTCTTCTGATCTTGEST: gi|116422550|gb|EG465142.1|EG465142
genomic: GCTGTGGCTGTGTTGGTACTTGTTCGAGGAGTGTCTGCTGCTTATCTTGCgtatcctaat ... ttgagaatagTACTCTCTTCTTCTGATCTTG
EST: GTTCGAGGAGTGTCTGCTGCTTATCTTGC TACTCTCTTCTTCTGATCTTGTTGATCTTGGTGGAGCTTGGATTCCCAGCA
genomic: GTTCGAGGAGTGTCTGCTGCTTATCTTGCgtatcctaat ... ttgagaatagTACTCTCTTCTTCTGATCTTGTTGATCTTGGTGGAGCTTGGATTCGCAGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTCATATACTTGTTCATTGGTATTGGTGTGGCTCTCTTTGTTATTTCTTGCTGTGGCTGTGTTGGTACTTGTTCGAGGAGTGTCTGCTGCTTATCTTGCgtatcctaattacttaacttgcttttcttatccaacatttcctgttagataaatactgccttgacctttagttatatgctcaggttattggtatctttgcttagttatgataggatccttaagcaaactaaaagtcttaacctttcatttccttaattgagaatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT