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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGTGCTCTGTTTTACCCTAATTCATTGGGGACAAGTGCAAGAACTTCTCTCCCTTTCCTTCTTTCTTCAACTGTGCTAGGTTACATTGTAGGTTCTGGgtaatattcaaaaacccttctttgttctccatctttaagcctctctatctcgcggttattctcagtgtcttatctttctttcttccag

Basic information

species Arabidopsis thaliana
transcript AT1G32080.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125322790|gb|EL336875.1|EL336875
EST:     CTCCCTTTCCTTCTTTCTTCAACTGTGCTAGGTTACATTGTAGGTTCTGG                         GTTGCCATCTTCTATTAAGAAAGTTTTCCATCCGATAATCTGCTGCGCGCT
genomic: CTCCCTTTCCTTCTTTCTTCAACTGTGCTAGGTTACATTGTAGGTTCTGGgtaatattca ... tttcttccagGTTGCCATCTTCTATTAAGAAAGTTTTCCATCCGATAATCTGCTGCGCGCT
EST: gi|125085893|gb|EL145564.1|EL145564
EST:     CTCCCTTTCCTTCTTTCTTCAACTGTGCTAGGTTACATTGTAGGTTCTGG                         GTTGCCATCTTCTATTAAGAAAG
genomic: CTCCCTTTCCTTCTTTCTTCAACTGTGCTAGGTTACATTGTAGGTTCTGGgtaatattca ... tttcttccagGTTGCCATCTTCTATTAAGAAAG
EST: gi|125039694|gb|EL111963.1|EL111963
EST:     CTCCCTTTCCTTCTTTCTTCAACTGTGCTAGGTTACATTGTAGGTTCTGG                         GTTGCCATCTTCTATTAAGAAAGTTTTCCATCCGATA
genomic: CTCCCTTTCCTTCTTTCTTCAACTGTGCTAGGTTACATTGTAGGTTCTGGgtaatattca ... tttcttccagGTTGCCATCTTCTATTAAGAAAGTTTTCCATCCGATA
EST: gi|86047418|gb|DR343173.1|DR343173
EST:     CTCCCTTTCCTTCTTTCTTCAAMTGTGCTAGGTTACATTGTAGGTTCTGG                         GTTGC-ATCTTCTATTA-GAAAGTTTTCCATCCGATAATCTGCTGCGCGCT
genomic: CTCCCTTTCCTTCTTTCTTCAACTGTGCTAGGTTACATTGTAGGTTCTGGgtaatattca ... tttcttccagGTTGCCATCTTCTATTAAGAAAGTTTTCCATCCGATAATCTGCTGCGCGCT
EST: gi|124915038|gb|EH988912.1|EH988912
EST:     TGCTAGGTTACATTGTAGGTTCTGG                         GTTGCCATCTTCTATTAAGAAAGTTTTCCATCCGATAATCTGCTGCGCGCT
genomic: TGCTAGGTTACATTGTAGGTTCTGGgtaatattca ... tttcttccagGTTGCCATCTTCTATTAAGAAAGTTTTCCATCCGATAATCTGCTGCGCGCT
EST: gi|125282049|gb|EL296134.1|EL296134
EST:     CTCCCTTTCCTTCTTTCTTCAACTGTGCTAGGTTACATTGTAGGTTCTGG                         GTTGCCATCTTCTATTAAGAAAGTTTTCCATCCGATAATCTGCTGCGCGCT
genomic: CTCCCTTTCCTTCTTTCTTCAACTGTGCTAGGTTACATTGTAGGTTCTGGgtaatattca ... tttcttccagGTTGCCATCTTCTATTAAGAAAGTTTTCCATCCGATAATCTGCTGCGCGCT
EST: gi|86047419|gb|DR343174.1|DR343174
EST:     CTCCCTTTCCTTCTTTCTTCAACTGTGCTAGGTTACATTGTAGGTTCTGG                         GTTGCCATCTTCTATTAAGAAAGTTTTCCATCCGATAATCTGCTGCGCGCT
genomic: CTCCCTTTCCTTCTTTCTTCAACTGTGCTAGGTTACATTGTAGGTTCTGGgtaatattca ... tttcttccagGTTGCCATCTTCTATTAAGAAAGTTTTCCATCCGATAATCTGCTGCGCGCT