1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
ATTATTTACCTTGGAACACCTGATGGACCTACCTGTCACACAGGGGAAGAGACTTGTTACTACACATCGGTTTTTGATCAATTAAACAATGATGAGgtttgcctttgttgaatttggtttttaccttttcctgtatcaagagacgaattgaaatctgaagaatatcaactactttcttactgaatcacag
species | Arabidopsis thaliana |
transcript | AT1G31860.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AAGAGACTTGTTACTACACATCGGTTTTTGATCAATTAAACAATGATGAG GCTTCAGGAAACAAGCTAGCATTAACAACATTGTACTCGCTAGAATCAATCEST: gi|86078213|gb|DR373970.1|DR373970
genomic: AAGAGACTTGTTACTACACATCGGTTTTTGATCAATTAAACAATGATGAGgtttgccttt ... tgaatcacagGCTTCAGGAAACAAGCTAGCATTAACAACATTGTACTCGCTAGAATCAATC
EST: AAGAGACTTGTTACTACACATCGGTTTTTGATCAATTAAACAATGATGAG GCTTCAGGAAACAAGCTAGCATTAACAACATTGTACTCGCTAGAATCAATCEST: gi|164179977|gb|ES055199.1|ES055199
genomic: AAGAGACTTGTTACTACACATCGGTTTTTGATCAATTAAACAATGATGAGgtttgccttt ... tgaatcacagGCTTCAGGAAACAAGCTAGCATTAACAACATTGTACTCGCTAGAATCAATC
EST: AAGAGACTTGTTACTACACATCGGTTTTTGATCAATTAAACAATGATGAG GCTTCAGGAAACAAGCTAGCATTAACAACATTGTACTCGCTAGAATC
genomic: AAGAGACTTGTTACTACACATCGGTTTTTGATCAATTAAACAATGATGAGgtttgccttt ... tgaatcacagGCTTCAGGAAACAAGCTAGCATTAACAACATTGTACTCGCTAGAATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTATTTACCTTGGAACACCTGATGGACCTACCTGTCACACAGGGGAAGAGACTTGTTACTACACATCGGTTTTTGATCAATTAAACAATGATGAGgtttgcctttgttgaatttggtttttaccttttcctgtatcaagagacgaattgaaatctgaagaatatcaactactttcttactgaatcacag
- - - - - - - - - - - - - - - - - - - - - - - AAGAGA