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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCCCTCGTGGAGTTAGTCACTATGTTGATTTGATGCAAGATCTGATTCCTGAAATGAAAGACGGAACAGTCAGGACCGCCATTGATACTGGCTGTGGGgttagtctctcttcaactactcaagttctctaatcagttctgatcggtcgaggttataattttccgtggtttctttggtag

Basic information

species Arabidopsis thaliana
transcript AT1G31850.3
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G31850.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA09G34640.1 (Glycine max), 5'ss of exon 3
GTTCCCTCGTGGAGTTAGTCACTATGTTGATTTGATGCAAGATCTGATTCCTGAAATGAAAGACGGAACAGTCAGGACCGCCATTGATACTGGCTGTGGGgttagtctctcttcaactactcaagttctctaatcagttctgatcggtcgaggttataattttccgtggtttct-ttggtag-------------------
||||||    || ||  || | |||||||||||||||||||||||||| || ||||||||||| || || || || || |||||||||||||| |||||||| ||| |  |||       |    ||||  |     || |  |   |  || ||||     | |    || |  ||   ||                   
GTTCCCCGACGGCGTCGGTGAATATGTTGATTTGATGCAAGATCTGATCCCAGAAATGAAAGATGGGACTGTGAGAACTGCCATTGATACTGGTTGTGGGgtgagttttacttgtgtc-ttatttttcttgaggtgtttttatttcatttagattatggcaatgcaaaattgcaattctcagtcaacactccttaaacatc

upper sequence: AT1G31850.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA01G35220.5 (Glycine max), 5'ss of exon 4
GTTCCCTCGTGGAGTTAGTCACTATGTTGATTTGATGCAAGATCTGATTCCTGAAATGAAAGACGGAACAGTCAGGACCGCCATTGATACTGGCTGTGGGgttagtctc----------------tcttcaactactcaagttc-tctaatcagttctgatcggtcgaggttataattttccgtggtttctttggtag---
||||||    || ||| || | |||||||||||||||||||||||||| || | ||||||||| || || || || || |||||||||||||| |||||||| ||| |                 |||| |  |  |  | ||| | ||   | |  ||      | |  ||  |||| ||      | |||    |    
GTTCCCCAACGGTGTTGGTGAATATGTTGATTTGATGCAAGATCTGATCCCAGGAATGAAAGATGGGACTGTGAGAACTGCCATTGATACTGGTTGTGGGgtgagttttacttatatcttatttttcttgaggtgttttatttcatttagctaatgatggcaatgcaacattgcaattctcaaca-ctccttaaacatcaa

upper sequence: AT1G31850.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA16G08120.1 (Glycine max), 5'ss of exon 4
GTTCCCTCGTGGAGTTAGTCACTATGTTGATTTGATGCAAGATCTGATTCCTGAAATGAAAGACGGAACAGTCAGGACCGCCATTGATACTGGCTGTGGGgttagtctctcttcaactactcaagttctctaatca-gttctgatcggtcgaggttataat--tttccgtggtttctttggtag----------------
||||||   ||| ||| || | ||||||||||| |||||||||||||| |||||||||||||| |||||  |  | || |||||||||||||| ||||| || ||| | |  |    | ||     | | || | |  ||  ||  ||        ||||   ||  |   ||| |||   ||                 
GTTCCCCAATGGTGTTGGTAAATATGTTGATTTAATGCAAGATCTGATCCCTGAAATGAAAGATGGAACCATTCGAACTGCCATTGATACTGGATGTGGAgtgagtgttttgttttttcctttttctttttatttatattgggaatggcttgcaaaataaccattctcaaagttccttcattactagtttaattacacat

upper sequence: AT1G31850.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv02s0033g01120.t01 (Vitis vinifera), 5'ss of exon 4
GTTCCCTCGTGGAGTTAGTCACTATGTTGATTTGATGCAAGATCTGATTCCTGAAATGAAAGACGGAACAGTCAGGACCGCCATTGATACTGGCTGTGGGgttagtctctcttca-actact-caagttctctaatcagttctgatcggtcgaggttataattttccgtggtttctttggtag------------------------------------------------------------------------------------------
||||||  | || ||| ||  |||||||||||||||||||||| ||||||| ||||||  ||| || || ||  | || |||||||| ||||| |||||||| || |    |||| |||| |     ||| |  |   | ||  ||    | |    ||||  |    |  | | |||| |                                                                                            
GTTCCCCAGAGGTGTTGGTGCCTATGTTGATTTGATGCAAGATTTGATTCCAGAAATGCTAGATGGGACTGTTCGAACTGCCATTGACACTGGGTGTGGGgtgagccctgattcatactattgtttcttcacggagttgatcatatgaaccaattcgataacctat--taatctatttgatgtttattctggaagctttgatttatgaccatcacctttgtatatgttcccaaaaattgtgtcacttagtctgtgtaattgctttatttctag