1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
ATTGATCTGTTCTACTCGTGCTGCTCATAATGAAGAAGCCGCCGCGAAAGCTGCGGCTTCTGTTGCTGACACCGGAGCTCCGACCATgtatggtttctcttaattttgatttcaaagcaatccatgtttgtgtttttgctacaaatgatcctaatctttcaaatatgtgacctagttaattcttcgttattgatttggatgtgattcgtggaagtttatgctagacgctcttgtgtatgtgtatcttgtggttttag
species | Arabidopsis thaliana |
transcript | AT1G31160.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GCCGCCGCGAAAGCTGCGGCTTCTGTTGCTGACACCGGAGCTCCGACCAT ATTTGACAAGATTATAGCAAAAGAGATTCCCTCAGATATTGTCTATGAAGAEST: gi|164067791|gb|ES116180.1|ES116180
genomic: GCCGCCGCGAAAGCTGCGGCTTCTGTTGCTGACACCGGAGCTCCGACCATgtatggtttc ... gtggttttagATTTGACAAGATTATAGCAAAAGAGATTCCCTCAGATATTGTCTATGAAGA
EST: CTTCTGTTGCTGACACCGGAGCTCCGACCAT ATTTGACAAGATTATAGCAAAAGAGATTCCCTCAGATGTTGTCTATGAAGAEST: gi|19877577|gb|AU238408.1|AU238408
genomic: CTTCTGTTGCTGACACCGGAGCTCCGACCATgtatggtttc ... gtggttttagATTTGACAAGATTATAGCAAAAGAGATTCCCTCAGATATTGTCTATGAAGA
EST: GCCGCCGCGAAAGCTGCGGCTTCTGTTGCTGACACCGGAGCTCCGACCAT ATTTGACAAGATTATAGCAAAAGAGATTCCCTCAGATATTGTCTATGAAGAEST: gi|124927789|gb|EL005489.1|EL005489
genomic: GCCGCCGCGAAAGCTGCGGCTTCTGTTGCTGACACCGGAGCTCCGACCATgtatggtttc ... gtggttttagATTTGACAAGATTATAGCAAAAGAGATTCCCTCAGATATTGTCTATGAAGA
EST: CGGCTTCTGTTGCTGACACCGGAGCTCCGACCAT ATTTGACAAGATTATAGCAAAAGAGATTCCCTCAGATATTGTCTATGAAGA
genomic: CGGCTTCTGTTGCTGACACCGGAGCTCCGACCATgtatggtttc ... gtggttttagATTTGACAAGATTATAGCAAAAGAGATTCCCTCAGATATTGTCTATGAAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTGATCTGTTCTACTCGTGCTGCTCATAATGAAGAAGCCGCCGCGAAAGCTGCGGCTTCTGTTGCTGACACCGGAGCTCCGACCATgtatggtttctcttaattttgatttcaaagcaatccatgtttgtgtttttgctacaaatgatcctaatctttcaaatatgtgacctagttaattcttcgttattgatttggatgtgattcgtggaagtttatgctagacgctcttgtgtatgtgtatcttgtggttttag
- - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT