1 5' 3' | 2 5' 3' | 3 5' 3' |
GTTCAAAACAGTAGACGATACCGAATTCTCCAACGAAACTGTCTCTGAAGTTGTTGTTAAGCCTGGATCATCTGAAACCATCGAAATCCCAGCTCCTGAGgtataattagaaaaccaaaccctaccttattcctgaagttgttaaaccctatctttctaattatggttttttgttttgtggttgttttcatag
species | Arabidopsis thaliana |
transcript | AT1G30690.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CCCAGCTCCTGAG ACTGAAGGTACATTGGTATGGGACATAGCGGTTTTGGGATGGGAAGTGAATEST: gi|116457305|gb|EG499897.1|EG499897
genomic: CCCAGCTCCTGAGgtataattag ... gttttcatagACTGAAGGTACATTGGTATGGGACATAGCGGTTTTGGGATGGGAAGTGAAT
EST: TTGTTGTTAAGCCTGGATCATCTGAAACCATCGAAATCCCAGCTCCTGAG ACTGAAGGTACATTGGTATGGGACATAGCGGTTTTGGGATGGGAAGTGAATEST: gi|124923063|gb|EL001292.1|EL001292
genomic: TTGTTGTTAAGCCTGGATCATCTGAAACCATCGAAATCCCAGCTCCTGAGgtataattag ... gttttcatagACTGAAGGTACATTGGTATGGGACATAGCGGTTTTGGGATGGGAAGTGAAT
EST: GATCATCTGAAACCATCGAAATCCCAGCTCCTGAG ACTGAAGGTACATTGGTATGGGACATAGCGGTTTTGGGATGGGAAGTGAAT
genomic: GATCATCTGAAACCATCGAAATCCCAGCTCCTGAGgtataattag ... gttttcatagACTGAAGGTACATTGGTATGGGACATAGCGGTTTTGGGATGGGAAGTGAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTCAAAACAGTAGACGATACCGAATTCTCCAACGAAACTGTCTCTGAAGTTGTTGTTAAGCCTGGATCATCTGAAACCATCGAAATCCCAGCTCCTGAGgtataattagaaaaccaaaccctaccttattcctgaagttgttaaaccctatctttctaattatggttttttgttttgtggttgttttcatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC