1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ACAATGCTATTATCAGGTTGATTGCTGGTACTATATTCATGCATGAGGAAGACTATAATGAGGCTCTGAAGCACACTCATTCTGGAGGAACCATGGATCTgtgagcttttcgatttgttttgtcttgtcacagcgatctcttttcgtttactcgataaatgattgttgtttctgcatattttag
species | Arabidopsis thaliana |
transcript | AT1G30630.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GGAGGAACCATGGATCT GCATGCTTTGAATGTCCAGATATTCATAAAGATGCACAGATCAGATTTTGCEST: gi|116463521|gb|EG506113.1|EG506113
genomic: GGAGGAACCATGGATCTgtgagctttt ... catattttagGCATGCTTTGAATGTCCAGATATTCATAAAGATGCACAGATCAGATTTTGC
EST: GGAGGAACCATGGATCT GCATGCTTTGAATGTCCAGATATTCATAAAGATGCACAGATCAGATTTTGCEST: gi|116463518|gb|EG506110.1|EG506110
genomic: GGAGGAACCATGGATCTgtgagctttt ... catattttagGCATGCTTTGAATGTCCAGATATTCATAAAGATGCACAGATCAGATTTTGC
EST: GGAGGAACCATGGATCT GCATGCTTTGAATGTCCAGATATTCATAAAGATGCACAGATCAGATTTTGCEST: gi|47828603|gb|CK118287.1|CK118287
genomic: GGAGGAACCATGGATCTgtgagctttt ... catattttagGCATGCTTTGAATGTCCAGATATTCATAAAGATGCACAGATCAGATTTTGC
EST: GACTATAATGAGGCTCTGAAGCACACTCATTCTGGAGGAACCATGGATCT GCATGCTTTGAATGTCCAGATATTCATAAAGATGCACAGATCAGATTTTGC
genomic: GACTATAATGAGGCTCTGAAGCACACTCATTCTGGAGGAACCATGGATCTgtgagctttt ... catattttagGCATGCTTTGAATGTCCAGATATTCATAAAGATGCACAGATCAGATTTTGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACAATGCTATTATCAGGTTGATTGCTGGTACTATATTCATGCATGAGGAAGACTATAATGAGGCTCTGAAGCACACTCATTCTGGAGGAACCATGGATCTgtgagcttttcgatttgttttgtcttgtcacagcgatctcttttcgtttactcgataaatgattgttgtttctgcatattttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA