1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ATGATATCACCGTCTTTGCAGCTCTTGCAAAGCCCCCAACTTCACAGTATGTGAACGCTTCTCGTTGGTACAATCACATTGATGCCCTCTTGAGGATCTCgtaagcttgattaccttctattgttttccatttactaatggattaaagtttttagctgtctggaatctggattaatctaatattgtttcgttataatcatgtttctatatacag
species | Arabidopsis thaliana |
transcript | AT1G30230.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CTTCTCGTTGGTACAATCACATTGATGCCCTCTTGAGGATCTC TGGTGTCTCCGCTGAAGGAAGCGGTGTCATTGTTGAGGGATCAGCTCCTAEST: gi|47831915|gb|CK121599.1|CK121599
genomic: CTTCTCGTTGGTACAATCACATTGATGCCCTCTTGAGGATCTCgtaagcttga ... ctatatacagTGGTGTCTCTGCTGAAGGAAGCGGTGTCATTGTTGAGGGATCAGCTCCTA
EST: GTGAACGCTTCTCGTTGGTACAATCACATTGATGCCCTCTTGAGGATCTC TGGTGTCTCTGCTGAAGGAAGCGGTGTCATTGTTGAGGGATCAGCTCCTATEST: gi|152037815|gb|BP798735.2|BP798735
genomic: GTGAACGCTTCTCGTTGGTACAATCACATTGATGCCCTCTTGAGGATCTCgtaagcttga ... ctatatacagTGGTGTCTCTGCTGAAGGAAGCGGTGTCATTGTTGAGGGATCAGCTCCTAT
EST: GTGAACGCTTCTCGTTGGTACAATCACATTGATGCCCTCTTGAGGATCTC TGGTGTCTCTGCTGAAGGAAGCGGTGTCATTGTTGAGGGATCAGCTCCTATEST: gi|152034196|gb|BP821871.2|BP821871
genomic: GTGAACGCTTCTCGTTGGTACAATCACATTGATGCCCTCTTGAGGATCTCgtaagcttga ... ctatatacagTGGTGTCTCTGCTGAAGGAAGCGGTGTCATTGTTGAGGGATCAGCTCCTAT
EST: GTGAACGCTTCTCGTGGGTACAATCAAATTGATGCCCTCTTGAGGATCTC TGGTGTCTCTGCTGAAGGAAGCGGTGTCATTGTTGAGGGATCAGCTCCTATEST: gi|152033786|gb|BP815997.2|BP815997
genomic: GTGAACGCTTCTCGTTGGTACAATCACATTGATGCCCTCTTGAGGATCTCgtaagcttga ... ctatatacagTGGTGTCTCTGCTGAAGGAAGCGGTGTCATTGTTGAGGGATCAGCTCCTAT
EST: TGAACGCTTCT-GTTGGTACAATCACATTGATGCCCCTCTTGAGGATTTC TGGTGTCTCTGGTGAAGGAAGCGGTGTCATTGTTGAGGGATCAGCTCCTATEST: gi|152037744|gb|BP796307.2|BP796307
genomic: TGAACGCTTCTCGTTGGTACAATCACATTGATG-CCCTCTTGAGGATCTCgtaagcttga ... ctatatacagTGGTGTCTCTGCTGAAGGAAGCGGTGTCATTGTTGAGGGATCAGCTCCTAT
EST: GTGAACGCTTCTCGTTGGTACAATCACATTGATGCCCTCTTGAGGATCTC TGGTGTCTCTGCTGAAGGAAGCGGTGTCATTGTTGAGGGATCAGCTCCTATEST: gi|86078823|gb|DR374580.1|DR374580
genomic: GTGAACGCTTCTCGTTGGTACAATCACATTGATGCCCTCTTGAGGATCTCgtaagcttga ... ctatatacagTGGTGTCTCTGCTGAAGGAAGCGGTGTCATTGTTGAGGGATCAGCTCCTAT
EST: GTGAACGCTTCTCGTTGGTACAATCACATTGATGCCCTCTTGAGGATCTC TGGTGTCTCTGCTGAAGGAAGCGGTGTCATTEST: gi|152037721|gb|BP796075.2|BP796075
genomic: GTGAACGCTTCTCGTTGGTACAATCACATTGATGCCCTCTTGAGGATCTCgtaagcttga ... ctatatacagTGGTGTCTCTGCTGAAGGAAGCGGTGTCATT
EST: GTGAACGCTTCTCGTTGGTACAATCACATTGATGCCCTCTTGAGGATCTC TGGTGTCTCTGCTGAAGGAAGCGGTGTCATTGTTGAGGGATCAGCTCCTATEST: gi|125002182|gb|EL074451.1|EL074451
genomic: GTGAACGCTTCTCGTTGGTACAATCACATTGATGCCCTCTTGAGGATCTCgtaagcttga ... ctatatacagTGGTGTCTCTGCTGAAGGAAGCGGTGTCATTGTTGAGGGATCAGCTCCTAT
EST: CAATCACATTGATGCCCTCTTGAGGATCTC TGGTGTCTCTGCTGAAGGAAGCGGTGTCATTGTTGAGGGATCAGCTCCTATEST: gi|116416034|gb|EG458626.1|EG458626
genomic: CAATCACATTGATGCCCTCTTGAGGATCTCgtaagcttga ... ctatatacagTGGTGTCTCTGCTGAAGGAAGCGGTGTCATTGTTGAGGGATCAGCTCCTAT
EST: GTGAACGCTTCTCGTTGGTACAATCACATTGATGCCCTCTTGAGGATCTC TGGTGTCTCTGCTGAAGGAAGCGGTGTCATTGTTGAGGGATCAGCTCCTATEST: gi|164080842|gb|ES009985.1|ES009985
genomic: GTGAACGCTTCTCGTTGGTACAATCACATTGATGCCCTCTTGAGGATCTCgtaagcttga ... ctatatacagTGGTGTCTCTGCTGAAGGAAGCGGTGTCATTGTTGAGGGATCAGCTCCTAT
EST: TGAACGCTTCTCGTTGGTACAATCACATTGATGCCCCTCTTGAGGATCTC TGGTGTCTCTGCT
genomic: TGAACGCTTCTCGTTGGTACAATCACATTGATGCCC-TCTTGAGGATCTCgtaagcttga ... ctatatacagTGGTGTCTCTGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGATATCACCGTCTTTGCAGCTCTTGCAAAGCCCCCAACTTCACAGTATGTGAACGCTTCTCGTTGGTACAATCACATTGATGCCCTCTTGAGGATCTCgtaagcttgattaccttctattgttttccatttactaatggattaaagtttttagctgtctggaatctggattaatctaatattgtttcgttataatcatgtttctatatacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT