Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGATATCACCGTCTTTGCAGCTCTTGCAAAGCCCCCAACTTCACAGTATGTGAACGCTTCTCGTTGGTACAATCACATTGATGCCCTCTTGAGGATCTCgtaagcttgattaccttctattgttttccatttactaatggattaaagtttttagctgtctggaatctggattaatctaatattgtttcgttataatcatgtttctatatacag

Basic information

species Arabidopsis thaliana
transcript AT1G30230.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125196001|gb|EL210955.1|EL210955
EST:     CTTCTCGTTGGTACAATCACATTGATGCCCTCTTGAGGATCTC                         TGGTGTCTCCGCTGAAGGAAGCGGTGTCATTGTTGAGGGATCAGCTCCTA
genomic: CTTCTCGTTGGTACAATCACATTGATGCCCTCTTGAGGATCTCgtaagcttga ... ctatatacagTGGTGTCTCTGCTGAAGGAAGCGGTGTCATTGTTGAGGGATCAGCTCCTA
EST: gi|152037815|gb|BP798735.2|BP798735
EST:     GTGAACGCTTCTCGTTGGTACAATCACATTGATGCCCTCTTGAGGATCTC                         TGGTGTCTCTGCTGAAGGAAGCGGTGTCATTGTTGAGGGATCAGCTCCTAT
genomic: GTGAACGCTTCTCGTTGGTACAATCACATTGATGCCCTCTTGAGGATCTCgtaagcttga ... ctatatacagTGGTGTCTCTGCTGAAGGAAGCGGTGTCATTGTTGAGGGATCAGCTCCTAT
EST: gi|47831915|gb|CK121599.1|CK121599
EST:     GTGAACGCTTCTCGTTGGTACAATCACATTGATGCCCTCTTGAGGATCTC                         TGGTGTCTCTGCTGAAGGAAGCGGTGTCATTGTTGAGGGATCAGCTCCTAT
genomic: GTGAACGCTTCTCGTTGGTACAATCACATTGATGCCCTCTTGAGGATCTCgtaagcttga ... ctatatacagTGGTGTCTCTGCTGAAGGAAGCGGTGTCATTGTTGAGGGATCAGCTCCTAT
EST: gi|152034196|gb|BP821871.2|BP821871
EST:     GTGAACGCTTCTCGTGGGTACAATCAAATTGATGCCCTCTTGAGGATCTC                         TGGTGTCTCTGCTGAAGGAAGCGGTGTCATTGTTGAGGGATCAGCTCCTAT
genomic: GTGAACGCTTCTCGTTGGTACAATCACATTGATGCCCTCTTGAGGATCTCgtaagcttga ... ctatatacagTGGTGTCTCTGCTGAAGGAAGCGGTGTCATTGTTGAGGGATCAGCTCCTAT
EST: gi|152033786|gb|BP815997.2|BP815997
EST:     TGAACGCTTCT-GTTGGTACAATCACATTGATGCCCCTCTTGAGGATTTC                         TGGTGTCTCTGGTGAAGGAAGCGGTGTCATTGTTGAGGGATCAGCTCCTAT
genomic: TGAACGCTTCTCGTTGGTACAATCACATTGATG-CCCTCTTGAGGATCTCgtaagcttga ... ctatatacagTGGTGTCTCTGCTGAAGGAAGCGGTGTCATTGTTGAGGGATCAGCTCCTAT
EST: gi|152037744|gb|BP796307.2|BP796307
EST:     GTGAACGCTTCTCGTTGGTACAATCACATTGATGCCCTCTTGAGGATCTC                         TGGTGTCTCTGCTGAAGGAAGCGGTGTCATTGTTGAGGGATCAGCTCCTAT
genomic: GTGAACGCTTCTCGTTGGTACAATCACATTGATGCCCTCTTGAGGATCTCgtaagcttga ... ctatatacagTGGTGTCTCTGCTGAAGGAAGCGGTGTCATTGTTGAGGGATCAGCTCCTAT
EST: gi|116416034|gb|EG458626.1|EG458626
EST:     GTGAACGCTTCTCGTTGGTACAATCACATTGATGCCCTCTTGAGGATCTC                         TGGTGTCTCTGCTGAAGGAAGCGGTGTCATTGTTGAGGGATCAGCTCCTAT
genomic: GTGAACGCTTCTCGTTGGTACAATCACATTGATGCCCTCTTGAGGATCTCgtaagcttga ... ctatatacagTGGTGTCTCTGCTGAAGGAAGCGGTGTCATTGTTGAGGGATCAGCTCCTAT
EST: gi|86078823|gb|DR374580.1|DR374580
EST:     GTGAACGCTTCTCGTTGGTACAATCACATTGATGCCCTCTTGAGGATCTC                         TGGTGTCTCTGCTGAAGGAAGCGGTGTCATT
genomic: GTGAACGCTTCTCGTTGGTACAATCACATTGATGCCCTCTTGAGGATCTCgtaagcttga ... ctatatacagTGGTGTCTCTGCTGAAGGAAGCGGTGTCATT
EST: gi|152037721|gb|BP796075.2|BP796075
EST:     GTGAACGCTTCTCGTTGGTACAATCACATTGATGCCCTCTTGAGGATCTC                         TGGTGTCTCTGCTGAAGGAAGCGGTGTCATTGTTGAGGGATCAGCTCCTAT
genomic: GTGAACGCTTCTCGTTGGTACAATCACATTGATGCCCTCTTGAGGATCTCgtaagcttga ... ctatatacagTGGTGTCTCTGCTGAAGGAAGCGGTGTCATTGTTGAGGGATCAGCTCCTAT
EST: gi|125002182|gb|EL074451.1|EL074451
EST:     CAATCACATTGATGCCCTCTTGAGGATCTC                         TGGTGTCTCTGCTGAAGGAAGCGGTGTCATTGTTGAGGGATCAGCTCCTAT
genomic: CAATCACATTGATGCCCTCTTGAGGATCTCgtaagcttga ... ctatatacagTGGTGTCTCTGCTGAAGGAAGCGGTGTCATTGTTGAGGGATCAGCTCCTAT
EST: gi|164080842|gb|ES009985.1|ES009985
EST:     TGAACGCTTCTCGTTGGTACAATCACATTGATGCCCCTCTTGAGGATCTC                         TGGTGTCTCTGCT
genomic: TGAACGCTTCTCGTTGGTACAATCACATTGATGCCC-TCTTGAGGATCTCgtaagcttga ... ctatatacagTGGTGTCTCTGCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATGATATCACCGTCTTTGCAGCTCTTGCAAAGCCCCCAACTTCACAGTATGTGAACGCTTCTCGTTGGTACAATCACATTGATGCCCTCTTGAGGATCTCgtaagcttgattaccttctattgttttccatttactaatggattaaagtttttagctgtctggaatctggattaatctaatattgtttcgttataatcatgtttctatatacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAT