1 5' 3' | 2 5' 3' | 3 5' 3' |
AGGGAATGATTATAATTTCCCATTCTTCAACCGCAAACCCGTTAAGGAAGTTGAAGAGCTGGTTCCATTTGTAATCGCTTCTATTTCTTCTACAATAACGgtatacatttttttcttgaattcttgttttgttagtcttaagaacgagtgaaaacagatttctagctatctgctgatttgtttgtcagagtttataatgagtttgttccattgggacttaatgttgaatccag
species | Arabidopsis thaliana |
transcript | AT1G28600.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTGAAGAGCTGGTTCCATTTGTAATCGCTTCTATTTCTTCTACAATAACG GAGTTGATTGGTATGGGGG-TAAAACCTTTCTAGTGCCCGGAGAGTTEST: gi|125086995|gb|EL146283.1|EL146283
genomic: TTGAAGAGCTGGTTCCATTTGTAATCGCTTCTATTTCTTCTACAATAACGgtatacattt ... ttgaatccagGAGTTGATTGGTATGGGGGGTAAAACCTTTCTAGTGCCCGGAGAGTT
EST: TTCCATTTGTAATCGCTTCTATTTCTTCTACAATAACG GAGTTGATTGGTAT-GGGGGTAAAACCTTTCTAGTGCCCGGAGAGTTCCCTEST: gi|125221139|gb|EL235224.1|EL235224
genomic: TTCCATTTGTAATCGCTTCTATTTCTTCTACAATAACGgtatacattt ... ttgaatccagGAGTTGATTGGTATGGGGGGTAAAACCTTTCTAGTGCCCGGAGAGTTCCCT
EST: TTCCATTTGTAATCGCTTCTATTTCTTCTACAATAACG GAGTTGATTGGTATGGGGGGTAAAACCTTTCTAGTGCCCGGAGAGTTCCCT
genomic: TTCCATTTGTAATCGCTTCTATTTCTTCTACAATAACGgtatacattt ... ttgaatccagGAGTTGATTGGTATGGGGGGTAAAACCTTTCTAGTGCCCGGAGAGTTCCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGGAATGATTATAATTTCCCATTCTTCAACCGCAAACCCGTTAAGGAAGTTGAAGAGCTGGTTCCATTTGTAATCGCTTCTATTTCTTCTACAATAACGgtatacatttttttcttgaattcttgttttgttagtcttaagaacgagtgaaaacagatttctagctatctgctgatttgtttgtcagagtttataatgagtttgttccattgggacttaatgttgaatccag
- - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT