1 5' 3' | 2 5' 3' | 3 5' 3' |
TGAGGCCCTCTGAGTACAAGAGGTCAAGATTATCAAGAAACAGGAGGACTGTAAACCGAGCATACGGTGGAGTCTTGTCTGGTTCTGCAGTCAGGGAAAGgtttgttgtccatcttacttgagtcatctttctattacaataaatttggtgttctttaacgtaatgttgtttttggattccgacag
species | Arabidopsis thaliana |
transcript | AT1G26880.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TCTTGTCTGGTTCTGCAGTCAGGGAAAG GATCATTCGGGCATTCCTTGTCGAAGAGCAAAAGATTGTGAAGAAAGTGTTEST: gi|125094149|gb|EL151688.1|EL151688
genomic: TCTTGTCTGGTTCTGCAGTCAGGGAAAGgtttgttgtc ... attccgacagGATCATTCGGGCATTCCTTGTCGAAGAGCAAAAGATTGTGAAGAAAGTGTT
EST: GTAAACCGAGCATACGGTGGAGTCTTGTCTGGTTCTGCAGTCAGGGAAAG GATCATTCGGGCATTCCTTGTCGAAGAGCAAAAEST: gi|124718310|gb|EH809712.1|EH809712
genomic: GTAAACCGAGCATACGGTGGAGTCTTGTCTGGTTCTGCAGTCAGGGAAAGgtttgttgtc ... attccgacagGATCATTCGGGCATTCCTTGTCGAAGAGCAAAA
EST: AACCGAGCATACGGTGGAGTCTTGTCTGGTTCTGCAGTCAGGGAAAG GATCATTCGGGCATTCCTTGTCGAAGAGCAAAAGATTGTGAAGAAAGTGTTEST: gi|164005137|gb|ES180829.1|ES180829
genomic: AACCGAGCATACGGTGGAGTCTTGTCTGGTTCTGCAGTCAGGGAAAGgtttgttgtc ... attccgacagGATCATTCGGGCATTCCTTGTCGAAGAGCAAAAGATTGTGAAGAAAGTGTT
EST: GTCAGGGAAAG GATCATTCGGGCATTCCTTGTCGAAGAGCAAAAGATTGTGAAGAAAGTGTTEST: gi|125066000|gb|EL133028.1|EL133028
genomic: GTCAGGGAAAGgtttgttgtc ... attccgacagGATCATTCGGGCATTCCTTGTCGAAGAGCAAAAGATTGTGAAGAAAGTGTT
EST: GTAAACCGAGCATACGGTGGAGTCTTGTCTGGTTCTGCAGTCAGGGAAAG GATCATTCGGGCATTCCTTGTCGAAGAGCEST: gi|164061720|gb|ES117887.1|ES117887
genomic: GTAAACCGAGCATACGGTGGAGTCTTGTCTGGTTCTGCAGTCAGGGAAAGgtttgttgtc ... attccgacagGATCATTCGGGCATTCCTTGTCGAAGAGC
EST: GGAGTCTTGTCTGGTTCTGCAGTCAGGGAAAG GATCATTCGGGCATTCCTTGTCGAAGAGCAAAAGATTGTGAAGAAAGTGTTEST: gi|164184193|gb|ES009614.1|ES009614
genomic: GGAGTCTTGTCTGGTTCTGCAGTCAGGGAAAGgtttgttgtc ... attccgacagGATCATTCGGGCATTCCTTGTCGAAGAGCAAAAGATTGTGAAGAAAGTGTT
EST: CTTGTCTGGTTCTGCAGTCAGGGAAAG GATCATTCGGGCATTCCTTGTCGAAGAGCAAAAGATTGTGAAGAAAGTGTTEST: gi|164002389|gb|ES136017.1|ES136017
genomic: CTTGTCTGGTTCTGCAGTCAGGGAAAGgtttgttgtc ... attccgacagGATCATTCGGGCATTCCTTGTCGAAGAGCAAAAGATTGTGAAGAAAGTGTT
EST: TTAAACCGAGCATACGGTGGAGTCTTGTCTGGTTCTGCAGTCAGGGAAAG GATCATTCGGGCATTCCTTGTCGAAGAGCAAAAGAEST: gi|86075408|gb|DR371165.1|DR371165
genomic: -TAAACCGAGCATACGGTGGAGTCTTGTCTGGTTCTGCAGTCAGGGAAAGgtttgttgtc ... attccgacagGATCATTCGGGCATTCCTTGTCGAAGAGCAAAAGA
EST: GTAAACCGAGCATACGGTGGAGTCTTGTCTGGTTCTGCAGTCAGGGAAAG GATCATTCGGGCATTCCTTGTCGAAGAGCAAAAGATTGTGAAGAAAGTGTTEST: gi|86081954|gb|DR377713.1|DR377713
genomic: GTAAACCGAGCATACGGTGGAGTCTTGTCTGGTTCTGCAGTCAGGGAAAGgtttgttgtc ... attccgacagGATCATTCGGGCATTCCTTGTCGAAGAGCAAAAGATTGTGAAGAAAGTGTT
EST: GTAAACCGAGCATACGGTGGAGTCTTGTCTGGTTCTGCAGTCAGGGAAAG GATCATTCGGGCATTCCTTGTCGAAGAGCAAAAGATTGTGAAGAAAGTGTTEST: gi|125097813|gb|EL154154.1|EL154154
genomic: GTAAACCGAGCATACGGTGGAGTCTTGTCTGGTTCTGCAGTCAGGGAAAGgtttgttgtc ... attccgacagGATCATTCGGGCATTCCTTGTCGAAGAGCAAAAGATTGTGAAGAAAGTGTT
EST: TAAACCGAGCATACGGTGGAGTCTTGTCTGGTTCTGCAGTCAGGGAAAG GATCATTCGGGCATTCCTTGTCGAAGAGCAAAAGATTGTGAAGAAAGTGTTEST: gi|164201713|gb|ES179123.1|ES179123
genomic: TAAACCGAGCATACGGTGGAGTCTTGTCTGGTTCTGCAGTCAGGGAAAGgtttgttgtc ... attccgacagGATCATTCGGGCATTCCTTGTCGAAGAGCAAAAGATTGTGAAGAAAGTGTT
EST: GTAAACCGAGCATACGGTGGAGTCTTGTCTGGTTCTGCAGTCAGGGAAAG GATCATTCGGGCATTCCTTGTCGEST: gi|86081699|gb|DR377456.1|DR377456
genomic: GTAAACCGAGCATACGGTGGAGTCTTGTCTGGTTCTGCAGTCAGGGAAAGgtttgttgtc ... attccgacagGATCATTCGGGCATTCCTTGTCG
EST: GTAAACCGAGCATACGGTGGAGTCTTGTCTGGTTCTGCAGTCAGGGAAAG GATCATTCGGGCATTCCTTGTCGAAGAGCAAAAGATTGTGAAGAAAGTGTTEST: gi|124920768|gb|EH994451.1|EH994451
genomic: GTAAACCGAGCATACGGTGGAGTCTTGTCTGGTTCTGCAGTCAGGGAAAGgtttgttgtc ... attccgacagGATCATTCGGGCATTCCTTGTCGAAGAGCAAAAGATTGTGAAGAAAGTGTT
EST: GTAAACCGAGCATACGGTGGAGTCTTGTCTGGTTCTGCAGTCAGGGAAAG GATCATTCGGG
genomic: GTAAACCGAGCATACGGTGGAGTCTTGTCTGGTTCTGCAGTCAGGGAAAGgtttgttgtc ... attccgacagGATCATTCGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAGGCCCTCTGAGTACAAGAGGTCAAGATTATCAAGAAACAGGAGGACTGTAAACCGAGCATACGGTGGAGTCTTGTCTGGTTCTGCAGTCAGGGAAAGgtttgttgtccatcttacttgagtcatctttctattacaataaatttggtgttctttaacgtaatgttgtttttggattccgacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG