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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGCTACGCCTAAGCAGATTAGAGATCTTATGAAGGTCGATGGTTTAACTAATGACGAAGTTAAAAGTCATTTACAGgtaacaaaacataatcattttatgttctcactacaacatagattcatagttctataatttttatcaactttcttgatttttatag

Basic information

species Arabidopsis thaliana
transcript AT1G25550.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G25550.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA01G21900.1 (Glycine max), 5'ss of exon 4
TTGCTACGCCTAAGCAGATTAGAGATCTTATGAAGGTCGATGGTTTAACTAATGACGAAGTTAAAAGTCATTTACAGgta-acaaaacataatcattttatgttctcactacaacatagattcatagttctataatttttatcaactttcttgatttttatag--------------
 ||| |||||||| ||||| || || || |||||||| |||||  |||| ||||| ||||| |||||||||||||||||          |    |  | || |  ||| |  ||  |     |  | |||||| || ||    |  || | |  ||  |   |              
CTGCCACGCCTAAACAGATCAGGGAGCTGATGAAGGTTGATGGCCTAACCAATGATGAAGTCAAAAGTCATTTACAGgtttgtgttgtgtgtgtaactaatttggtcattttaatttcttgccccatttctatgatcttacatattttccctttttggtgctgtgccaaaattgagt

upper sequence: AT1G25550.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv01s0011g03110.t01 (Vitis vinifera), 5'ss of exon 4
TTGCTACGCCTAAGCAGATTAGAGATCTTATGAAGGTCGATGGTTTAACTAATGACGAAGTTAAAAGTCATTTACAGgta---acaaaacat------aatcattttatgttctcactacaacatag-attcatagttctataatttttatcaactt---tcttgattttta-tag-
||||||| || |||||||| || || || |||||||| |||||  | |||||||| ||||| ||||| |||||||||||    | ||||| |      ||  |    |   | |  ||     ||   |||   | ||   |||||  | | |   |   || ||||   |  ||| 
TTGCTACCCCAAAGCAGATCAGGGAACTGATGAAGGTTGATGGGCTTACTAATGATGAAGTCAAAAGCCATTTACAGgtttgtataaaactttcctcgaagtagcaaaaactttatctttgttatgtcattttcattttggtaattcatcttagtatggatcctgatggatgctagg