1 5' 3' | 2 5' 3' | 3 5' 3' |
CAGCTAAAAGAACTCGTAGAACTACTCGAACCGAGTACATTATCTCCATGGATGCTGATAACATCTCAAGATCCAGCAACTCTTACCTCGGAAAGCTCAGgttcgttttcagtcctagacatagtagtttgctactgttgaatattatggtcgtttatctattgttcaaataatcttttgtgattcccatttaatcaagcttaatgaggtttctttatctctctctcag
species | Arabidopsis thaliana |
transcript | AT1G25280.3 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GGAAAGCTCAG ATCAAACTTCCTTGGGACAAAGTTCTTGGTGTACGACACGCAACCACCACCEST: gi|116406985|gb|EG449577.1|EG449577
genomic: GGAAAGCTCAGgttcgttttc ... tctctctcagATCAAACTTCCTTGGGACAAAGTTCTTGGTGTACGACACGCAACCACCACC
EST: GATGCTGATAACATCTCAAGATCCAGCAACTCTTACCTCGGAAAGCTCAG ATCAAACTTCCTTGGGACAAAGTTCTTGGTGTACGACACGCAACCACCACC
genomic: GATGCTGATAACATCTCAAGATCCAGCAACTCTTACCTCGGAAAGCTCAGgttcgttttc ... tctctctcagATCAAACTTCCTTGGGACAAAGTTCTTGGTGTACGACACGCAACCACCACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGCTAAAAGAACTCGTAGAACTACTCGAACCGAGTACATTATCTCCATGGATGCTGATAACATCTCAAGATCCAGCAACTCTTACCTCGGAAAGCTCAGgttcgttttcagtcctagacatagtagtttgctactgttgaatattatggtcgtttatctattgttcaaataatcttttgtgattcccatttaatcaagcttaatgaggtttctttatctctctctcag
- - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA