Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCTTCCTAGGTTCGAACAAAGTGATGCAGGTTGCTCTTGGTCGTTCTGCAGAAGATGAACTCCGTTCTGGTATCTACAAAGTCTCCAAGgtttgtgtattctgcttcttacaatggttcttttatgttaaatggtcattttttgtcagttagatttacatatgttgtggaatgttgtttcag

Basic information

species Arabidopsis thaliana
transcript AT1G25260.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86050076|gb|DR345831.1|DR345831
EST:     GTCGTTCTGCAGAAGATGAACTCCGTTCTGGTATCTACAAAGTCTCCAAG                         CTGCTTCGTGGTGATACTGGACTTCTTGTTACAGATATGCCAAAGGAAGAA
genomic: GTCGTTCTGCAGAAGATGAACTCCGTTCTGGTATCTACAAAGTCTCCAAGgtttgtgtat ... gttgtttcagCTGCTTCGTGGTGATACTGGACTTCTTGTTACTGATATGCCAAAGGAAGAA
EST: gi|86050071|gb|DR345826.1|DR345826
EST:     GTCGTTCTGCAGAAGATGAACTCCGTTCTGGTATCTACAAAGTCTCCAAG                         CTGCTTCGTGGTGATACTGGACTTCTTGTTACTGATATGCCAAAGGAAGAA
genomic: GTCGTTCTGCAGAAGATGAACTCCGTTCTGGTATCTACAAAGTCTCCAAGgtttgtgtat ... gttgtttcagCTGCTTCGTGGTGATACTGGACTTCTTGTTACTGATATGCCAAAGGAAGAA
EST: gi|86050072|gb|DR345827.1|DR345827
EST:     GTCGTTCTGCAGAAGATGAACTCCGTTCTGGTATCTACAAAGTCTCCAAG                         CTGCTTCGTGGTGATACTGGACTTCTTGTTACTGATATGCCAAAGGAAGAA
genomic: GTCGTTCTGCAGAAGATGAACTCCGTTCTGGTATCTACAAAGTCTCCAAGgtttgtgtat ... gttgtttcagCTGCTTCGTGGTGATACTGGACTTCTTGTTACTGATATGCCAAAGGAAGAA
EST: gi|124873872|gb|EH955517.1|EH955517
EST:     TGAACTCCGTTCTGGTATCTACAAAGTCTCCAAG                         CTGCTTCGTGGTGATACTGGACTTCTTGTTACTGATATGCCAAAGGAAG
genomic: TGAACTCCGTTCTGGTATCTACAAAGTCTCCAAGgtttgtgtat ... gttgtttcagCTGCTTCGTGGTGATACTGGACTTCTTGTTACTGATATGCCAAAGGAAG
EST: gi|86050070|gb|DR345825.1|DR345825
EST:     GTCGTTCTGCAGAAGATGAACTCCGTTCTGGTATCTACAAAGTCTCCAAG                         CTGCTTCGTGGTGATACTGGACTTCTTGTTACTGATATGCCAAAGGAAGA-
genomic: GTCGTTCTGCAGAAGATGAACTCCGTTCTGGTATCTACAAAGTCTCCAAGgtttgtgtat ... gttgtttcagCTGCTTCGTGGTGATACTGGACTTCTTGTTACTGATATGCCAAAGGAAGAA
EST: gi|164132272|gb|EL970338.1|EL970338
EST:     GTCGTTCTGCAGAAGATGAACTCCGTTCTGGTATCTACAAAGTCTCCAAG                         CTGCTTCGTGGTGATACTGGACTTCTTGTTACTGATATGCC
genomic: GTCGTTCTGCAGAAGATGAACTCCGTTCTGGTATCTACAAAGTCTCCAAGgtttgtgtat ... gttgtttcagCTGCTTCGTGGTGATACTGGACTTCTTGTTACTGATATGCC
EST: gi|164153192|gb|ES091719.1|ES091719
EST:     TCTGGTATCTACAAAGTCTCCAAG                         CTGCTTCGTGGTGATACTGGACTTCTTGTTACTGATATGCCAAAGGAAGAA
genomic: TCTGGTATCTACAAAGTCTCCAAGgtttgtgtat ... gttgtttcagCTGCTTCGTGGTGATACTGGACTTCTTGTTACTGATATGCCAAAGGAAGAA
EST: gi|86050065|gb|DR345820.1|DR345820
EST:     GTCGTTCTGCAGAAGATGAACTCCGTTCTGGTATCTACAAAGTCTCCAAG                         CTGCTTCGTGGTGATACTGGACTTCTTGTTACAGATATGCCAAAGGAAGAA
genomic: GTCGTTCTGCAGAAGATGAACTCCGTTCTGGTATCTACAAAGTCTCCAAGgtttgtgtat ... gttgtttcagCTGCTTCGTGGTGATACTGGACTTCTTGTTACTGATATGCCAAAGGAAGAA
EST: gi|164175331|gb|ES009806.1|ES009806
EST:     CTGCAGAAGATGAACTCCGTTCTGGTATCTACAAAGTCTCCAAG                         CTGCTTCGTGGTGATACTGGACTTCTTGTTACTGATATGCCAAAGGAAGAA
genomic: CTGCAGAAGATGAACTCCGTTCTGGTATCTACAAAGTCTCCAAGgtttgtgtat ... gttgtttcagCTGCTTCGTGGTGATACTGGACTTCTTGTTACTGATATGCCAAAGGAAGAA
EST: gi|86050077|gb|DR345832.1|DR345832
EST:     GTCGTTCTGCAGAAGATGAACTCCGTTCTGGTATCTACAAAGTCTCCAAG                         CTGCTTCGTGGTGATACTGGACTTCTTGTTACAGATATGCCAAAGGAAGAA
genomic: GTCGTTCTGCAGAAGATGAACTCCGTTCTGGTATCTACAAAGTCTCCAAGgtttgtgtat ... gttgtttcagCTGCTTCGTGGTGATACTGGACTTCTTGTTACTGATATGCCAAAGGAAGAA
EST: gi|86050073|gb|DR345828.1|DR345828
EST:     GTCGTTCTGCAGAAGATGAACTCCGTTCTGGTATCTACAAAGTCTCCAAG                         CTGCTTCGTGGTGATACTGGACTTCTTGTTACTGATATGCCAAAGGAAGAA
genomic: GTCGTTCTGCAGAAGATGAACTCCGTTCTGGTATCTACAAAGTCTCCAAGgtttgtgtat ... gttgtttcagCTGCTTCGTGGTGATACTGGACTTCTTGTTACTGATATGCCAAAGGAAGAA
EST: gi|86050067|gb|DR345822.1|DR345822
EST:     GTCGTTCTGCAGAAGATGAACTCCGTTCTGGTATCTACAAAGTCTCCAAG                         CTGCTTCGTGGTGATACTGGACTTCTTGTTACAGATATGCCAAAGGAAGAA
genomic: GTCGTTCTGCAGAAGATGAACTCCGTTCTGGTATCTACAAAGTCTCCAAGgtttgtgtat ... gttgtttcagCTGCTTCGTGGTGATACTGGACTTCTTGTTACTGATATGCCAAAGGAAGAA
EST: gi|86050074|gb|DR345829.1|DR345829
EST:     GTCGTTCTGCAGAAGATGAACTCCGTTCTGGTATCTACAAAGTCTCCAAG                         CTGCTTCGTGGTGATACTGGACTTCTTGTTACAGATATGCCAA
genomic: GTCGTTCTGCAGAAGATGAACTCCGTTCTGGTATCTACAAAGTCTCCAAGgtttgtgtat ... gttgtttcagCTGCTTCGTGGTGATACTGGACTTCTTGTTACTGATATGCCAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTCTTCCTAGGTTCGAACAAAGTGATGCAGGTTGCTCTTGGTCGTTCTGCAGAAGATGAACTCCGTTCTGGTATCTACAAAGTCTCCAAGgtttgtgtattctgcttcttacaatggttcttttatgttaaatggtcattttttgtcagttagatttacatatgttgtggaatgttgtttcag

- - - - - - - - - - - - - - - - - - - - - - -  CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG