Sequence
atgc intronic sequence ATGC exonic sequenceATTGTAGACAAGGAAGCAGTTGAGGAAGTGAGAACTCTTAGAGAGATTCCAGAGATAAAGCCTGGTTACATTGTGCAGCTAAAAGTGgtaactactgttggcctaggttgtaatttctttttcttgggtgagtaagatcaaactatctttcatcttctaagtgaaacctttcatttactttgtttgaacag
Basic information
species | Arabidopsis thaliana |
transcript | AT1G24240.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT1G24240.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA08G34520.1 (Glycine max), 5'ss of exon 3
ATTGTAGACAAGGAAGCAGTTGAGGAAGTGAGAACTCTTAGAGAGATTCCAGAGATAAAGCCTGGTTACATTGTGCAGCTAAAAGTGgtaactactgttggcctaggttgtaatttctttttc---ttgggtgagtaagatcaaact-atctttcatcttctaagtgaaacctttcatttactttgtttgaacag
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ATTTTAGACAAGGAGGCTGTAGAGGATGTGAGAGGGCAAAGAGAGATACCTGACATAAAGCCTGGTTATATTGTGCAACTCAAAGTGgtatggaatttattttttattcatatttgtttgtttggtttttgtttgtgatagtaatttgatcttttgtttactaaatctgatataacag-----------------
upper sequence: AT1G24240.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv17s0000g09390.t01 (Vitis vinifera), 5'ss of exon 4
ATTGTAGACAAGGAAGCAGTTGAGGAAGTGAGAACTCTTAGAGAGATTCCAGAGATAAAGCCTGGTTACATTGTGCAGCTAAAAGTGgtaacta-----ctgttggcctaggttgtaatttcttt-----ttcttg--ggtgagtaagatcaaa---ctatctttc----atcttctaagtgaaacctttcatt----tactttgtttgaacag
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ATTCTAGATAAGGAAGCAGTGGAGGAGGTGAGGGCAAAGAGAGAGATACCTGAGATAAAGCCTGGTTATATTGTTCAGCTCAAAGTGgtatgtaagtgcttgttgatattgtttttatttttattattaatttctgtcattatgtgagtctgggtggctatgttaagggaattttagctataagttgttccattgtgatatttggtatgagcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|116420245|gb|EG462837.1|EG462837EST: TTAGAGAGATTCCAGAGATAAAGCCTGGTTACATTGTGCAGCTAAAAGTG GAAGTACCTGAGAACAAGAGGCGTGTATCAATCGTAAAAGGCGTCGTCATA
genomic: TTAGAGAGATTCCAGAGATAAAGCCTGGTTACATTGTGCAGCTAAAAGTGgtaactactg ... gtttgaacagGAAGTGCCTGAGAACAAGAGGCGTGTATCAATCGTAAAAGGCGTCGTCATA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATTGTAGACAAGGAAGCAGTTGAGGAAGTGAGAACTCTTAGAGAGATTCCAGAGATAAAGCCTGGTTACATTGTGCAGCTAAAAGTGgtaactactgttggcctaggttgtaatttctttttcttgggtgagtaagatcaaactatctttcatcttctaagtgaaacctttcatttactttgtttgaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT