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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTATTTTCACAAACGTTGGGAACCCTCATGCTTTAGGACAGAAGCCATTGACATTTCCTCGCCAGgtatgtgtgtatagacaattattagacagccagacttcaatctccggcttgagcctaaatagtaaaacgaataccaattacag

Basic information

species Arabidopsis thaliana
transcript AT1G23310.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G23310.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: EFJ23041 (Selaginella moellendorffii), 5'ss of exon 2
ATTATTTTCACAAACGTTGGGAACCCTCATGCTTTAGGACAGAAGCCATTGACATTTCCTCGCCAGgtatgtgtgtatagacaattattagacagccagacttcaatctccggcttgagcctaaatagtaaaacgaataccaattacag
|| || || ||||||||||| ||||| || ||| ||||||||||||||||||| |||||||||||||||    |    | |  | |    |     |  | ||   |       || ||                              
ATAATCTTTACAAACGTTGGAAACCCACACGCTCTAGGACAGAAGCCATTGACGTTTCCTCGCCAGgtac---taggcacatgacttcaggttcttctaattttctttcgttttttaag------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86074112|gb|DR369869.1|DR369869
EST:     TTGGGAACCCTCATGCTTTAGGACAGAAGCCATTGACATTTCCTCGCCAG                         GTGGTTGCGCTTTGCCAAGCTCCGTTTCTACTAGATGACCCAAATGTTGGA
genomic: TTGGGAACCCTCATGCTTTAGGACAGAAGCCATTGACATTTCCTCGCCAGgtatgtgtgt ... ccaattacagGTGGTTGCGCTTTGCCAAGCTCCGTTTCTACTAGATGACCCAAATGTTGGA
EST: gi|152034049|gb|BP866344.2|BP866344
EST:     TTGGGAACCCTCATGCTTTAGGACAGAAGCCATTGACATTTC-TCGCCAG                         GTGGTTGCGCTTCGCCAAGACTCCG
genomic: TTGGGAACCCTCATGCTTTAGGACAGAAGCCATTGACATTTCCTCGCCAGgtatgtgtgt ... ccaattacagGTGGTTGCGCTTTGCCAAG-CTCCG
EST: gi|86074113|gb|DR369870.1|DR369870
EST:     TTGGGAACCCTCATGCTTTAGGACAGAAGCCATTGACATTTCCTCGCCAG                         GTGGTTGCGCTTTGCCAAGCTCCGTTTCTACTAGATGACCCAAATGTTGGA
genomic: TTGGGAACCCTCATGCTTTAGGACAGAAGCCATTGACATTTCCTCGCCAGgtatgtgtgt ... ccaattacagGTGGTTGCGCTTTGCCAAGCTCCGTTTCTACTAGATGACCCAAATGTTGGA
EST: gi|86074142|gb|DR369899.1|DR369899
EST:     TTGGGAACCCTCATGCTTTAGGACAGAAGCCATTGACATTTCCTCGCCAG                         GTGGTTGCGCTTTGCCAAGCTCCGTTTCTACTAGATGACCCAAATGTTGGA
genomic: TTGGGAACCCTCATGCTTTAGGACAGAAGCCATTGACATTTCCTCGCCAGgtatgtgtgt ... ccaattacagGTGGTTGCGCTTTGCCAAGCTCCGTTTCTACTAGATGACCCAAATGTTGGA
EST: gi|116482909|gb|EG525501.1|EG525501
EST:     TTGGGAACCCTCATGCTTTAGGACAGAAGCCATTGACATTTCCTCGCCAG                         GTGGTTGCGCTTTGCCAAGCTCCGTTTCTACTAGATGACCCAAATGTTGGA
genomic: TTGGGAACCCTCATGCTTTAGGACAGAAGCCATTGACATTTCCTCGCCAGgtatgtgtgt ... ccaattacagGTGGTTGCGCTTTGCCAAGCTCCGTTTCTACTAGATGACCCAAATGTTGGA
EST: gi|86074122|gb|DR369879.1|DR369879
EST:     TTGGGAACC-TCATGCTTTAGGACAGAAGCCATTGACATTTCCTCGCCAG                         GTGGTTGCGCTTTGCCAAGCTCCGTTTCTACTAGATGACCCAAATGTTGGA
genomic: TTGGGAACCCTCATGCTTTAGGACAGAAGCCATTGACATTTCCTCGCCAGgtatgtgtgt ... ccaattacagGTGGTTGCGCTTTGCCAAGCTCCGTTTCTACTAGATGACCCAAATGTTGGA
EST: gi|86074111|gb|DR369868.1|DR369868
EST:     TTGGGA-CCCTCATGCTTTAGGACAGAGGCCATTGACATTTCCTCGCCAG                         GTGGTTGCGCTTTGCCAAGCTCCGTTTCTACTAGATGACCCAAATGTTGGA
genomic: TTGGGAACCCTCATGCTTTAGGACAGAAGCCATTGACATTTCCTCGCCAGgtatgtgtgt ... ccaattacagGTGGTTGCGCTTTGCCAAGCTCCGTTTCTACTAGATGACCCAAATGTTGGA
EST: gi|125126841|gb|EL171908.1|EL171908
EST:     TTGGGAACCCTCATGCTTTAGGACAGAAGCCATTGACATTTCCTCGCCAG                         GTGGTTGCGCTTTGCCAAGCTCCGTTTCTACTAGATGACCCAAATGTTGGA
genomic: TTGGGAACCCTCATGCTTTAGGACAGAAGCCATTGACATTTCCTCGCCAGgtatgtgtgt ... ccaattacagGTGGTTGCGCTTTGCCAAGCTCCGTTTCTACTAGATGACCCAAATGTTGGA
EST: gi|86074137|gb|DR369894.1|DR369894
EST:     TTGGNAACCCTCATGCTTTAGGACAGAAGCCATTGACATTTCCTCGCCAG                         GNGGTTGCGCTTTGCCAAGCTCCGTTTCTACNANATGACCCAAATGTTGGA
genomic: TTGGGAACCCTCATGCTTTAGGACAGAAGCCATTGACATTTCCTCGCCAGgtatgtgtgt ... ccaattacagGTGGTTGCGCTTTGCCAAGCTCCGTTTCTACTAGATGACCCAAATGTTGGA
EST: gi|86074131|gb|DR369888.1|DR369888
EST:     TTGGGAACCCTCATGCTTTAGGACAGAAGCCATTGACATTTCCTCGCCAG                         GNGGTTGCGCTTTGCCAAGCTCCGTTTCTACTANATGACCCAAATGTTGGA
genomic: TTGGGAACCCTCATGCTTTAGGACAGAAGCCATTGACATTTCCTCGCCAGgtatgtgtgt ... ccaattacagGTGGTTGCGCTTTGCCAAGCTCCGTTTCTACTAGATGACCCAAATGTTGGA
EST: gi|86074128|gb|DR369885.1|DR369885
EST:     TTGGGAACCCTCATGCTTTAGGACAGAAGCCATTGACATTTCCTCGCCAG                         GNGGTTGCGCTTTGCCAAGCTCCGTTTCTACTANATGACCCAAATGGTGGA
genomic: TTGGGAACCCTCATGCTTTAGGACAGAAGCCATTGACATTTCCTCGCCAGgtatgtgtgt ... ccaattacagGTGGTTGCGCTTTGCCAAGCTCCGTTTCTACTAGATGACCCAAATGTTGGA
EST: gi|86074133|gb|DR369890.1|DR369890
EST:     TTGGGAACC-TCATGCTTTAGGACAGAAGCCATTGACATTTCCTCGCCAG                         GTGGTTGCGCTTTGCCAAGCTCCGTTTCTACTAGATGACCCAAATGTTGGA
genomic: TTGGGAACCCTCATGCTTTAGGACAGAAGCCATTGACATTTCCTCGCCAGgtatgtgtgt ... ccaattacagGTGGTTGCGCTTTGCCAAGCTCCGTTTCTACTAGATGACCCAAATGTTGGA
EST: gi|86074105|gb|DR369862.1|DR369862
EST:     TTGGGAACCCTCATGCTTTAGGACAGAAGCCATTGACATTTCCTCGCCAG                         GTGGTTGCGCTTTGCCAAGCTCCGTTTCTACTAGATGACCCAAATGTTGGA
genomic: TTGGGAACCCTCATGCTTTAGGACAGAAGCCATTGACATTTCCTCGCCAGgtatgtgtgt ... ccaattacagGTGGTTGCGCTTTGCCAAGCTCCGTTTCTACTAGATGACCCAAATGTTGGA
EST: gi|116434550|gb|EG477142.1|EG477142
EST:     TTGGGAACCCTCATGCTTTAGGACAGAAGCCATTGACATTTCCTCGCCAG                         GTGGTCGCGCTTTGCCAAGCTCCGTTTCTACTAGATGACCCAAATGTTGGA
genomic: TTGGGAACCCTCATGCTTTAGGACAGAAGCCATTGACATTTCCTCGCCAGgtatgtgtgt ... ccaattacagGTGGTTGCGCTTTGCCAAGCTCCGTTTCTACTAGATGACCCAAATGTTGGA
EST: gi|86074118|gb|DR369875.1|DR369875
EST:     TTGGGAACCCTCATGCTTTAGGACAGAAGCCATTGACATTTCCTCGCCAG                         GTGGTTGCGCTTTGCCAAGCTCCGTTTCTACTAGATGACCCAAATGTTGGA
genomic: TTGGGAACCCTCATGCTTTAGGACAGAAGCCATTGACATTTCCTCGCCAGgtatgtgtgt ... ccaattacagGTGGTTGCGCTTTGCCAAGCTCCGTTTCTACTAGATGACCCAAATGTTGGA
EST: gi|125029351|gb|EL101620.1|EL101620
EST:     CATTGACATTTCCTCGCCAG                         GTGGTTGCGCTTTGCCAAGCTCCGTTTCTACTAGATGACCCAAATGTTGGA
genomic: CATTGACATTTCCTCGCCAGgtatgtgtgt ... ccaattacagGTGGTTGCGCTTTGCCAAGCTCCGTTTCTACTAGATGACCCAAATGTTGGA
EST: gi|125040185|gb|EL112454.1|EL112454
EST:     ATTTCCTCGCCAG                         GTGGTTGCGCTTTGCCAAGCTCCGTTTCTACTAGATGACCCAAATGTTGGA
genomic: ATTTCCTCGCCAGgtatgtgtgt ... ccaattacagGTGGTTGCGCTTTGCCAAGCTCCGTTTCTACTAGATGACCCAAATGTTGGA
EST: gi|86074145|gb|DR369902.1|DR369902
EST:     TTGGGAACC-TCATGCTTTAGGACAGAAGCCATTGACATTTCCTCGCCAG                         GTGGTTGCGCTTTGCCAAGCTCCGTTTCTACTAGATGACCCAAATGTTGGA
genomic: TTGGGAACCCTCATGCTTTAGGACAGAAGCCATTGACATTTCCTCGCCAGgtatgtgtgt ... ccaattacagGTGGTTGCGCTTTGCCAAGCTCCGTTTCTACTAGATGACCCAAATGTTGGA
EST: gi|86074138|gb|DR369895.1|DR369895
EST:     TTGGGAACCCTCATGCTTTAGGACAGAAGCCATTGACATTTCCTCGCCAG                         GTGGTTGCGCTTTGCCAAGCTCCGTTTCTACTAGATGACCCAAATGTTGGA
genomic: TTGGGAACCCTCATGCTTTAGGACAGAAGCCATTGACATTTCCTCGCCAGgtatgtgtgt ... ccaattacagGTGGTTGCGCTTTGCCAAGCTCCGTTTCTACTAGATGACCCAAATGTTGGA
EST: gi|125257774|gb|EL271859.1|EL271859
EST:     GACAGAAGCCATTGACATTTCCTCGCCAG                         GTGGTTGTGCTTTGCCAAGCTCCGTTTCTACTAGATGACCCAAATGTTGGA
genomic: GACAGAAGCCATTGACATTTCCTCGCCAGgtatgtgtgt ... ccaattacagGTGGTTGCGCTTTGCCAAGCTCCGTTTCTACTAGATGACCCAAATGTTGGA
EST: gi|125029508|gb|EL101777.1|EL101777
EST:     ATTGACATTTCCTCGCCAG                         GTGGTTGCGCTTTGCCAAGCTCCGTTTCTACTAGATGACCCAAATGTTGGA
genomic: ATTGACATTTCCTCGCCAGgtatgtgtgt ... ccaattacagGTGGTTGCGCTTTGCCAAGCTCCGTTTCTACTAGATGACCCAAATGTTGGA
EST: gi|86074116|gb|DR369873.1|DR369873
EST:     TTGGGAACCCTCATGCTTTAGGACAGAAGCCATTGACATTTCCTCGCCAG                         GTGGTTGCGCTTTGCCAAGCTCCGTTTCTACTAGATGACCCAAATGTTGGA
genomic: TTGGGAACCCTCATGCTTTAGGACAGAAGCCATTGACATTTCCTCGCCAGgtatgtgtgt ... ccaattacagGTGGTTGCGCTTTGCCAAGCTCCGTTTCTACTAGATGACCCAAATGTTGGA
EST: gi|86074119|gb|DR369876.1|DR369876
EST:     TTGGGAACC-TCATGCTTTAGGACAGAAGCCATTGACATTTCCTCGCCAG                         GTGGTTGCGCTTTGCCAAGCTCCGTTTCTACTAGATGACCCAAATGTTGGA
genomic: TTGGGAACCCTCATGCTTTAGGACAGAAGCCATTGACATTTCCTCGCCAGgtatgtgtgt ... ccaattacagGTGGTTGCGCTTTGCCAAGCTCCGTTTCTACTAGATGACCCAAATGTTGGA
EST: gi|125022614|gb|EL094883.1|EL094883
EST:     CTCATGCTTTAGGACAGAAGCCATTGACATTTCCTCGCCAG                         GTGGTTGCGCTTTGCCAAGCTCCGTTTCT
genomic: CTCATGCTTTAGGACAGAAGCCATTGACATTTCCTCGCCAGgtatgtgtgt ... ccaattacagGTGGTTGCGCTTTGCCAAGCTCCGTTTCT
EST: gi|86074121|gb|DR369878.1|DR369878
EST:     TTGGGAACC-TCATGCTTTAGGACAGAAGCCATTGACATTTSCTCGCSAG                         GTGGTTGSGACTTTGSSAAGCTCCGTTTCTACTAGATGACCCAAATGTTGG
genomic: TTGGGAACCCTCATGCTTTAGGACAGAAGCCATTGACATTTCCTCGCCAGgtatgtgtgt ... ccaattacagGTGGTTGCG-CTTTGCCAAGCTCCGTTTCTACTAGATGACCCAAATGTTGG
EST: gi|116434562|gb|EG477154.1|EG477154
EST:     TTGGGAACCCTCATGCTTTAGGACAGAAGCCATTGACATTTCCTCGCCAG                         GTGGTCGCGCTTTGCCAAGCTCCGTTTCTACTAGATGACCCAAATGTTGGA
genomic: TTGGGAACCCTCATGCTTTAGGACAGAAGCCATTGACATTTCCTCGCCAGgtatgtgtgt ... ccaattacagGTGGTTGCGCTTTGCCAAGCTCCGTTTCTACTAGATGACCCAAATGTTGGA
EST: gi|86074120|gb|DR369877.1|DR369877
EST:     TTGGGAACCCTCATGCTTTAGGACAGAAGCCATTGACATTTCCTCGCCAG                         GTGGTTGCGCTTTGCCAAGCTCCGTTTCTACTAGATGACCCAAATGTTGGA
genomic: TTGGGAACCCTCATGCTTTAGGACAGAAGCCATTGACATTTCCTCGCCAGgtatgtgtgt ... ccaattacagGTGGTTGCGCTTTGCCAAGCTCCGTTTCTACTAGATGACCCAAATGTTGGA
EST: gi|86074139|gb|DR369896.1|DR369896
EST:     TTGGGAACCCTCATGCTTTAGGACAGAAGCCATTGACATTTCCTCGCCAG                         GTGGTTGCGCTTTGCCAAGCTCCGTTTCTACTAGATGACCCAAATGTTGGA
genomic: TTGGGAACCCTCATGCTTTAGGACAGAAGCCATTGACATTTCCTCGCCAGgtatgtgtgt ... ccaattacagGTGGTTGCGCTTTGCCAAGCTCCGTTTCTACTAGATGACCCAAATGTTGGA
EST: gi|125186649|gb|EL201603.1|EL201603
EST:     TTTAGGACAGAAGCCATTGACATTTCCTCGCCAG                         GTGGTTGCGCTTTGCCAAGCTCCGTTTCTACTAGATGACCCAAATGTTGGA
genomic: TTTAGGACAGAAGCCATTGACATTTCCTCGCCAGgtatgtgtgt ... ccaattacagGTGGTTGCGCTTTGCCAAGCTCCGTTTCTACTAGATGACCCAAATGTTGGA
EST: gi|86074115|gb|DR369872.1|DR369872
EST:     TTGGGAACC-TCATGCTTTAGGACAGAAGCCATTGACATTTCCTCGCCAG                         GTGGTTGCGCTTTGCCAAGCTCCGTTTCTACTAGATGACCCAAATGTTGGA
genomic: TTGGGAACCCTCATGCTTTAGGACAGAAGCCATTGACATTTCCTCGCCAGgtatgtgtgt ... ccaattacagGTGGTTGCGCTTTGCCAAGCTCCGTTTCTACTAGATGACCCAAATGTTGGA
EST: gi|116482910|gb|EG525502.1|EG525502
EST:     TTGGGAACCCTCATGCTTTAGGACAGAAGCCATTGACATTTCCTCGCCAG                         GTGGTTGCGCTTTGCCAAGCTCCGTTTCTACTAGATGACCCAAATGTTGGA
genomic: TTGGGAACCCTCATGCTTTAGGACAGAAGCCATTGACATTTCCTCGCCAGgtatgtgtgt ... ccaattacagGTGGTTGCGCTTTGCCAAGCTCCGTTTCTACTAGATGACCCAAATGTTGGA
EST: gi|86074146|gb|DR369903.1|DR369903
EST:     TTGGGAACCCTCATGCTTTAGGACAGAAGCCATTGACATTTCCTCGCCAG                         GTGGTTGCGCTTTGCCAAGCTCCGTTTCTACTAGATGACCCAAATGTTGGA
genomic: TTGGGAACCCTCATGCTTTAGGACAGAAGCCATTGACATTTCCTCGCCAGgtatgtgtgt ... ccaattacagGTGGTTGCGCTTTGCCAAGCTCCGTTTCTACTAGATGACCCAAATGTTGGA
EST: gi|116400460|gb|EG443052.1|EG443052
EST:     TTGGGAACCCTCATGCTTTAGGACAGAAGCCATTGACATTTCCTCGCCAG                         GTGGTTGCGCTTTGCCAAGCTCCGTTTCTACTAGATGACCCAAATGTTGGA
genomic: TTGGGAACCCTCATGCTTTAGGACAGAAGCCATTGACATTTCCTCGCCAGgtatgtgtgt ... ccaattacagGTGGTTGCGCTTTGCCAAGCTCCGTTTCTACTAGATGACCCAAATGTTGGA
EST: gi|86074107|gb|DR369864.1|DR369864
EST:     TTGGGAACCCTCATGCTTTAGGACAGAAGCCATTGACATTTCCTCGCCAG                         GTGGTTGCGCTTTGCCAAGCTCCGTTTCTACTAGATGACCCAAATGTTGGA
genomic: TTGGGAACCCTCATGCTTTAGGACAGAAGCCATTGACATTTCCTCGCCAGgtatgtgtgt ... ccaattacagGTGGTTGCGCTTTGCCAAGCTCCGTTTCTACTAGATGACCCAAATGTTGGA
EST: gi|86074110|gb|DR369867.1|DR369867
EST:     TTGGGAACCCTCATGCTTTAGGACAGAAGCCATTGACATTTCCTCGCCAG                         GTGGTTGCGCTTTGCCAAGCTCCGTTTCTACTAGATGACCCAAATGTTGGA
genomic: TTGGGAACCCTCATGCTTTAGGACAGAAGCCATTGACATTTCCTCGCCAGgtatgtgtgt ... ccaattacagGTGGTTGCGCTTTGCCAAGCTCCGTTTCTACTAGATGACCCAAATGTTGGA
EST: gi|86074127|gb|DR369884.1|DR369884
EST:     TTGGGAACCCTCATGCTTTAGGACAGAAGCCATTGACATTTCCTCGCCAG                         GTGGTTGCGCTTTGCCAAGCTCCGTTTCTACTAGATGACCCAAATGTTGGA
genomic: TTGGGAACCCTCATGCTTTAGGACAGAAGCCATTGACATTTCCTCGCCAGgtatgtgtgt ... ccaattacagGTGGTTGCGCTTTGCCAAGCTCCGTTTCTACTAGATGACCCAAATGTTGGA
EST: gi|125091884|gb|EL149707.1|EL149707
EST:     TTGGGAACCCTCATGCTTTAGGACAGAAGCCATTGACATTTCCTCGCCAG                         GTGGTTGCGCTTTGCCAAGCTCCGTTTCTACTAG
genomic: TTGGGAACCCTCATGCTTTAGGACAGAAGCCATTGACATTTCCTCGCCAGgtatgtgtgt ... ccaattacagGTGGTTGCGCTTTGCCAAGCTCCGTTTCTACTAG
EST: gi|86074144|gb|DR369901.1|DR369901
EST:     TTGGGAACC-TCATGCTTTAGGACAGAAGCCATTGACATTTCCTCGCCAG                         GTGGTTGCGCTTTGCCAAGCTCCGTTTCTACTAGATGACCCAAATGTTGGA
genomic: TTGGGAACCCTCATGCTTTAGGACAGAAGCCATTGACATTTCCTCGCCAGgtatgtgtgt ... ccaattacagGTGGTTGCGCTTTGCCAAGCTCCGTTTCTACTAGATGACCCAAATGTTGGA
EST: gi|86074123|gb|DR369880.1|DR369880
EST:     TTGGGAACCCTCATGCTTTAGGACAGAAGCCATTGACATTTCCTCGCCAG                         GTGGTTGCGCTTTGCCAAGCTCCGTTTCTACTAGATGACCCAAATGTTGGA
genomic: TTGGGAACCCTCATGCTTTAGGACAGAAGCCATTGACATTTCCTCGCCAGgtatgtgtgt ... ccaattacagGTGGTTGCGCTTTGCCAAGCTCCGTTTCTACTAGATGACCCAAATGTTGGA
EST: gi|86074125|gb|DR369882.1|DR369882
EST:     TTGGGAACCCTCATGCTTTAGGACAGAAGCCATTGACATTTCCTCGCCAG                         GTGGTTGCGCTTTGCCAAGCTCCGTTTCTACTAGATGACCCAAATGTTGGA
genomic: TTGGGAACCCTCATGCTTTAGGACAGAAGCCATTGACATTTCCTCGCCAGgtatgtgtgt ... ccaattacagGTGGTTGCGCTTTGCCAAGCTCCGTTTCTACTAGATGACCCAAATGTTGGA
EST: gi|86074132|gb|DR369889.1|DR369889
EST:     TTGGGAACCCTCATGCTTTAGGACAGAAGCCATTGACATTTCCTCGCCAG                         GTGGTTGCGCTTTGCCAAGCTCCGTTTCTACTAGATGACCCAAATGTTGGA
genomic: TTGGGAACCCTCATGCTTTAGGACAGAAGCCATTGACATTTCCTCGCCAGgtatgtgtgt ... ccaattacagGTGGTTGCGCTTTGCCAAGCTCCGTTTCTACTAGATGACCCAAATGTTGGA
EST: gi|86074106|gb|DR369863.1|DR369863
EST:     TTGGGAACCCTCATGCTTTAGGACAGAAGCCATTGACATTTCCTCGCCAG                         GTGGTTGCGCTTTGCCAAGCTCCGTTTCTACTAGATGACCCAAATGTTGGA
genomic: TTGGGAACCCTCATGCTTTAGGACAGAAGCCATTGACATTTCCTCGCCAGgtatgtgtgt ... ccaattacagGTGGTTGCGCTTTGCCAAGCTCCGTTTCTACTAGATGACCCAAATGTTGGA
EST: gi|86074109|gb|DR369866.1|DR369866
EST:     TTGGGAACCCTCATGCTTTAGGACAGAAGCCATTGACATTTCCTCGCCAG                         GTGGTTGCGCTTTGCCAAGCTCCGTTTCTACTAGATGACCCAAATGTTGGA
genomic: TTGGGAACCCTCATGCTTTAGGACAGAAGCCATTGACATTTCCTCGCCAGgtatgtgtgt ... ccaattacagGTGGTTGCGCTTTGCCAAGCTCCGTTTCTACTAGATGACCCAAATGTTGGA
EST: gi|86074129|gb|DR369886.1|DR369886
EST:     TTGGGAACCCTCATGCTTTAGGACAGAAGCCATTGACATTTCCTCGCCAG                         GTGGTTGCGCTTTGCCAAGCTCCGTTTCTACTAGATGACCCAAATGTTGGA
genomic: TTGGGAACCCTCATGCTTTAGGACAGAAGCCATTGACATTTCCTCGCCAGgtatgtgtgt ... ccaattacagGTGGTTGCGCTTTGCCAAGCTCCGTTTCTACTAGATGACCCAAATGTTGGA
EST: gi|86074143|gb|DR369900.1|DR369900
EST:     TTGGGAACCCTCATGCTTTAGGACAGAAGCCATTGACATTTCCTCGCCAG                         GTGGTTGCGCTTTGCCAAGCTCCGTTTCTACTAGATGACCCAAATGTTGGA
genomic: TTGGGAACCCTCATGCTTTAGGACAGAAGCCATTGACATTTCCTCGCCAGgtatgtgtgt ... ccaattacagGTGGTTGCGCTTTGCCAAGCTCCGTTTCTACTAGATGACCCAAATGTTGGA
EST: gi|152038525|gb|AV826916.2|AV826916
EST:     TTGGGAACCCTCATGCTTTAGGACAGAAGCCATTGACATTTCCTCGCCAG                         GTGGTTGCGCTTTGCCAAGCTCCGTTTCTACTAGATGACCCAAATGTTGGA
genomic: TTGGGAACCCTCATGCTTTAGGACAGAAGCCATTGACATTTCCTCGCCAGgtatgtgtgt ... ccaattacagGTGGTTGCGCTTTGCCAAGCTCCGTTTCTACTAGATGACCCAAATGTTGGA
EST: gi|86074136|gb|DR369893.1|DR369893
EST:     TTGGGAACCCTCATGCTTTAGGACAGAAGCCATTGACATTTCCTCGCCAG                         GNGGNTGCGCTTTGCCAAGCTCCGTTTCTACTAGATGACCCAAATGTTGGA
genomic: TTGGGAACCCTCATGCTTTAGGACAGAAGCCATTGACATTTCCTCGCCAGgtatgtgtgt ... ccaattacagGTGGTTGCGCTTTGCCAAGCTCCGTTTCTACTAGATGACCCAAATGTTGGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATTATTTTCACAAACGTTGGGAACCCTCATGCTTTAGGACAGAAGCCATTGACATTTCCTCGCCAGgtatgtgtgtatagacaattattagacagccagacttcaatctccggcttgagcctaaatagtaaaacgaataccaattacag

- - - - - - - - - - - - - - - - - - - - AGAAGC