1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GAAAGGAGATTACTATCGCTATCTTGCGGAGTTCAGTTCTGGTGCTGAACGCAAGGAAGCTGCAGATCAGTCTCTTGAAGCATATAAGgtcctttgatcatgtttatttgttttcttatttttgtgccacccctcttatatttgagctgggaataacctaagacaagtcttgcttttttcgtactgggaatgtag
species | Arabidopsis thaliana |
transcript | AT1G22300.3 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AAGCATATAAG GCTGCTGTTGCTTGCTGCAGAGAATGGTTTGGCACCCACACATCCAGTTAGEST: gi|124984411|gb|EL057069.1|EL057069
genomic: AAGCATATAAGgtcctttgat ... gggaatgtagGCTGCTGTTGC-TGCTGCAGAGAATGGTTTGGCACCCACACATCCAGTTAG
EST: TGCAGATCAGTCTCTTGAAGCATATAAG GCTGCTGTTGCTGCTGCAGAGAATGGTTTGGCACCCACACAEST: gi|124962238|gb|EL036674.1|EL036674
genomic: TGCAGATCAGTCTCTTGAAGCATATAAGgtcctttgat ... gggaatgtagGCTGCTGTTGCTGCTGCAGAGAATGGTTTGGCACCCACACA
EST: TCTCTTGAAGCATATAAG GCTGCTGTTGCTGCTGCAGAGAATGGTTTGGCACCCACACATCCAGTTAGAEST: gi|125284521|gb|EL298606.1|EL298606
genomic: TCTCTTGAAGCATATAAGgtcctttgat ... gggaatgtagGCTGCTGTTGCTGCTGCAGAGAATGGTTTGGCACCCACACATCCAGTTAGA
EST: CTGGTGCTGAACGCAAGGAAGCTGCAGATCAGTCTCTTGAAGCATATAAG GCTGCTGTTGCTGCTGCAGAGAATEST: gi|47830317|gb|CK120001.1|CK120001
genomic: CTGGTGCTGAACGCAAGGAAGCTGCAGATCAGTCTCTTGAAGCATATAAGgtcctttgat ... gggaatgtagGCTGCTGTTGCTGCTGCAGAGAAT
EST: CTGGTGCTGAACGCAAGGAAGCTGCAGATCAGTCTCTTGAAGCATATAAG GCTGCTGTTGCTGCTGCAGAGAATGGTTTGGCACCCACACATCCAGTTAGAEST: gi|124933497|gb|EL010649.1|EL010649
genomic: CTGGTGCTGAACGCAAGGAAGCTGCAGATCAGTCTCTTGAAGCATATAAGgtcctttgat ... gggaatgtagGCTGCTGTTGCTGCTGCAGAGAATGGTTTGGCACCCACACATCCAGTTAGA
EST: TCTCTTGAAGCATATAAG GCTGCTGTTGCTGCTGCAGAGAATGGTTTGGCACCCACACATCCAGTTAGAEST: gi|124727891|gb|EH819293.1|EH819293
genomic: TCTCTTGAAGCATATAAGgtcctttgat ... gggaatgtagGCTGCTGTTGCTGCTGCAGAGAATGGTTTGGCACCCACACATCCAGTTAGA
EST: CTGGTGCTGAACGCAAGGAAGCTGCAGATCAGTCTCTTGAAGCATATAAG GCTGCTGTTGCTGCTGCAGAGAATEST: gi|47831981|gb|CK121665.1|CK121665
genomic: CTGGTGCTGAACGCAAGGAAGCTGCAGATCAGTCTCTTGAAGCATATAAGgtcctttgat ... gggaatgtagGCTGCTGTTGCTGCTGCAGAGAAT
EST: CTGGTGCTGAACGCAAGGAAGCTGCAGATCAGTCTCTTGAAGCATATAAG GCTGCTGTTGCTGCTGCAGAGAATGGTTTGGCACCCACACATCCAGTTAGAEST: gi|125233964|gb|EL248049.1|EL248049
genomic: CTGGTGCTGAACGCAAGGAAGCTGCAGATCAGTCTCTTGAAGCATATAAGgtcctttgat ... gggaatgtagGCTGCTGTTGCTGCTGCAGAGAATGGTTTGGCACCCACACATCCAGTTAGA
EST: TCTCTTGAAGCATATAAG GCTGCTGTTGCTGCTGCAGAGAATGGTTTGGCACCCACACATCCAGTTAGAEST: gi|47828961|gb|CK118645.1|CK118645
genomic: TCTCTTGAAGCATATAAGgtcctttgat ... gggaatgtagGCTGCTGTTGCTGCTGCAGAGAATGGTTTGGCACCCACACATCCAGTTAGA
EST: CTGGTGCTGAACGCAAGGAAGCTGCAGATCAGTCTCTTGAAGCATATAAG GCTGCTGTTGCTGCTGCAGAGAATGGTTTGGCACCCACACATCCAGTTAGAEST: gi|125118909|gb|EL167387.1|EL167387
genomic: CTGGTGCTGAACGCAAGGAAGCTGCAGATCAGTCTCTTGAAGCATATAAGgtcctttgat ... gggaatgtagGCTGCTGTTGCTGCTGCAGAGAATGGTTTGGCACCCACACATCCAGTTAGA
EST: TGCAGATCAGTCTCTTGAAGCATATAAG GCTGCTGTTGCTGCTGCAGAGAATGGTTTGGCACCCACA
genomic: TGCAGATCAGTCTCTTGAAGCATATAAGgtcctttgat ... gggaatgtagGCTGCTGTTGCTGCTGCAGAGAATGGTTTGGCACCCACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAAGGAGATTACTATCGCTATCTTGCGGAGTTCAGTTCTGGTGCTGAACGCAAGGAAGCTGCAGATCAGTCTCTTGAAGCATATAAGgtcctttgatcatgtttatttgttttcttatttttgtgccacccctcttatatttgagctgggaataacctaagacaagtcttgcttttttcgtactgggaatgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC