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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAAGGATCTTGTATCTTGCAAGAACAAGGAGATTGAAGAGTATTTGTTTGTCAAACATGTCATGAGACCTTTGTTGGGTCGTAAACATGTCAATCCTGGAgtatgtttcctcttcatttccttctcttgtcatgattctaacgcaatggttacatgaaaatggaaattttttaaagggttttgagtcttgtgatgatttgggaatttttttgtgttgttgcaactttgcag

Basic information

species Arabidopsis thaliana
transcript AT1G22100.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116379659|gb|EG422251.1|EG422251
EST:     TCAAACATGTCATGAGACCTTTGTTGGGTCGTAAACATGTCAATCCTGGA                         ATACTTCTTCTTGTAGCAAAGGAATTTCTTGAATCTGTTGAGAAAATTATA
genomic: TCAAACATGTCATGAGACCTTTGTTGGGTCGTAAACATGTCAATCCTGGAgtatgtttcc ... aactttgcagATACTTCTTCTTGTAGCAAAGGAATTTCTTGAATCTGTTGAGAAAATTATA
EST: gi|116379645|gb|EG422237.1|EG422237
EST:     TCAAACATGTCATGAGACCTTTGTTGGGTCGTAAACATGTCAATCCTGGA                         ATACTTCTTCTTGTAGCAAAGGAATTTCTTGAATCTGTTGAGAAAATTATA
genomic: TCAAACATGTCATGAGACCTTTGTTGGGTCGTAAACATGTCAATCCTGGAgtatgtttcc ... aactttgcagATACTTCTTCTTGTAGCAAAGGAATTTCTTGAATCTGTTGAGAAAATTATA
EST: gi|116379652|gb|EG422244.1|EG422244
EST:     TCAAACATGTCATGAGACCTTTGTTGGGTCGTAAACATGTCAATCCTGGA                         ATACTTCTTCTTGTAGCAAAGGAATTTCTTGAATCTGTTGAGAAAATTATA
genomic: TCAAACATGTCATGAGACCTTTGTTGGGTCGTAAACATGTCAATCCTGGAgtatgtttcc ... aactttgcagATACTTCTTCTTGTAGCAAAGGAATTTCTTGAATCTGTTGAGAAAATTATA
EST: gi|116379662|gb|EG422254.1|EG422254
EST:     TCAAACATGTCATGAGACCTTTGTTGGGTCGTAAACATGTCAATCCTGGA                         ATACTTCTTCTTGTAGCAAAGGAATTTCTTGAATCTGTTGAGAAAATTATA
genomic: TCAAACATGTCATGAGACCTTTGTTGGGTCGTAAACATGTCAATCCTGGAgtatgtttcc ... aactttgcagATACTTCTTCTTGTAGCAAAGGAATTTCTTGAATCTGTTGAGAAAATTATA
EST: gi|116379661|gb|EG422253.1|EG422253
EST:     TCAAACATGTCATGAGACCTTTGTTGGGTCGTAAACATGTCAATCCTGGA                         ATACTTCTTCTTGTAGCAAAGGAATTTCTTGAATCTGTTGAGAAAATTATA
genomic: TCAAACATGTCATGAGACCTTTGTTGGGTCGTAAACATGTCAATCCTGGAgtatgtttcc ... aactttgcagATACTTCTTCTTGTAGCAAAGGAATTTCTTGAATCTGTTGAGAAAATTATA
EST: gi|116379648|gb|EG422240.1|EG422240
EST:     TCAAACATGTCATGAGACCTTTGTTGGGTCGTAAACATGTCAATCCTGGA                         ATACTTCTTCTTGTAGCAAAGGAATTTCTTGAATCTGTTGAGAAAATTATA
genomic: TCAAACATGTCATGAGACCTTTGTTGGGTCGTAAACATGTCAATCCTGGAgtatgtttcc ... aactttgcagATACTTCTTCTTGTAGCAAAGGAATTTCTTGAATCTGTTGAGAAAATTATA
EST: gi|116379656|gb|EG422248.1|EG422248
EST:     TCAAACATGTCATGAGACCTTTGTTGGGTCGTAAACATGTCAATCCCGGA                         ATACTTCTTCTTGTAGCAAAGGAATTTCTTGAATCTGTTGAGAAAATTATA
genomic: TCAAACATGTCATGAGACCTTTGTTGGGTCGTAAACATGTCAATCCTGGAgtatgtttcc ... aactttgcagATACTTCTTCTTGTAGCAAAGGAATTTCTTGAATCTGTTGAGAAAATTATA
EST: gi|116379651|gb|EG422243.1|EG422243
EST:     TCAAACATGTCATGAGACCTTTGTTGGGTCGTAAACATGTCAATCCTGGA                         ATACTTCTTCTTGTAGCAAAGGAATTTCTTGAATCTGTTGAGAAAATTATA
genomic: TCAAACATGTCATGAGACCTTTGTTGGGTCGTAAACATGTCAATCCTGGAgtatgtttcc ... aactttgcagATACTTCTTCTTGTAGCAAAGGAATTTCTTGAATCTGTTGAGAAAATTATA
EST: gi|116379643|gb|EG422235.1|EG422235
EST:     TCAAACATGTCATGAGACCTTTGTTGGGTCGTAAACATGTCAATCCTGGA                         ATACTTCTTCTTGTAGCAAAGGAATTTCTTGAATCTGTTGAGAAAATTATA
genomic: TCAAACATGTCATGAGACCTTTGTTGGGTCGTAAACATGTCAATCCTGGAgtatgtttcc ... aactttgcagATACTTCTTCTTGTAGCAAAGGAATTTCTTGAATCTGTTGAGAAAATTATA
EST: gi|116379654|gb|EG422246.1|EG422246
EST:     TCAAACATGTCATGAGACCTTTGTTGGGTCGTAAACATGTCAATCCTGGA                         ATACTTCTTCTTGTAGCAAAGGAATTTCTTGAATCTGTTGAGAAAATTATA
genomic: TCAAACATGTCATGAGACCTTTGTTGGGTCGTAAACATGTCAATCCTGGAgtatgtttcc ... aactttgcagATACTTCTTCTTGTAGCAAAGGAATTTCTTGAATCTGTTGAGAAAATTATA