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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAAGCAAAAGAAGCAGTGAAGGTGCTCAAGAAACGGTTAGGAAGTAAAAATTCTAAAGTCCAGATTCTTGCTCTTTATgtgagtgtttacctttttactcatacaatgctttggttggattctctttattgtattgatcttctttgggggattggttcag

Basic information

species Arabidopsis thaliana
transcript AT1G21380.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125213461|gb|EL228293.1|EL228293
EST:     GTCCAGATTCTTGCTCTTTAT                         GCTTTGGAAACTTTGAGTAAGAATTGTGGCGAGAGTGTGTACCAG
genomic: GTCCAGATTCTTGCTCTTTATgtgagtgttt ... attggttcagGCTTTGGAAACTTTGAGTAAGAATTGTGGCGAGAGTGTGTACCAG
EST: gi|86072584|gb|DR368341.1|DR368341
EST:     AGAAACGGTTAGGAAGTAAAAATTCTAAAGTCCAGATTCTTGCTCTTTAT                         GCTTTGGAAACTTTGAGTAAGAATTGTGGCGAGAGTGTGTACCAGCTCATT
genomic: AGAAACGGTTAGGAAGTAAAAATTCTAAAGTCCAGATTCTTGCTCTTTATgtgagtgttt ... attggttcagGCTTTGGAAACTTTGAGTAAGAATTGTGGCGAGAGTGTGTACCAGCTCATT