1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GCTCTCTGTGACTAAGAAGCCTGCTAAGGGAGCCAAAGGTGCTGCTAAAGATCCAAACAAACCTAAGAGGCCTTCCAGTGCCTTCTTCGTTTTCATgtaatccttcgaatcttcacttttatctctgtttagtacttgtggtttgtttctatggaataactttattctggtaaaaagtttttgagtattgactttg...
species | Arabidopsis thaliana |
transcript | AT1G20696.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AAAGATCCAAACAAACCTAAGAGGCCTTCCAGTGCCTTCTTCGTTTTCAT GGAAGATTTCCGTGTGACGTACAAGGAGGAGCACCCTAAGAACAAGTCTGTEST: gi|125295611|gb|EL309696.1|EL309696
genomic: AAAGATCCAAACAAACCTAAGAGGCCTTCCAGTGCCTTCTTCGTTTTCATgtaatccttc ... tgatttgtagGGAAGATTTCCGTGTGACGTACAAGGAGGAGCACCCTAAGAACAAGTCTGT
EST: AAAGATCCAAACAAACCTACGAGGCCTTCCAGTGCCTTCTTCGTTTTCAT GGAAGATTTCCGTGTGACGTACAAGGEST: gi|124828250|gb|EH913116.1|EH913116
genomic: AAAGATCCAAACAAACCTAAGAGGCCTTCCAGTGCCTTCTTCGTTTTCATgtaatccttc ... tgatttgtagGGAAGATTTCCGTGTGACGTACAAGG
EST: TCCAGTGCCTTCTTCGTTTTCAT GGAAGATTTCCGTGTGACGTACAAGGAGGAGCACCCTAAGAACAAGTCTGTEST: gi|301502423|gb|HO207963.1|HO207963
genomic: TCCAGTGCCTTCTTCGTTTTCATgtaatccttc ... tgatttgtagGGAAGATTTCCGTGTGACGTACAAGGAGGAGCACCCTAAGAACAAGTCTGT
EST: AAAGATCCAAACAAACCTAAGAGGCCTTCCAGTGCCTTCTTCGTTTTCAT GGAAGATTTCCGTGTGACGTACAAGGAGGAGCACCCTAAGAACAAGTCTGTEST: gi|164160537|gb|EL999155.1|EL999155
genomic: AAAGATCCAAACAAACCTAAGAGGCCTTCCAGTGCCTTCTTCGTTTTCATgtaatccttc ... tgatttgtagGGAAGATTTCCGTGTGACGTACAAGGAGGAGCACCCTAAGAACAAGTCTGT
EST: GTGCCTTCTTCGTTTTCAT GGAAGATTTCCGTGTGACGTACAAGGAGGAGCACCCTAAGAACAAGTCTGTEST: gi|164208171|gb|ES067428.1|ES067428
genomic: GTGCCTTCTTCGTTTTCATgtaatccttc ... tgatttgtagGGAAGATTTCCGTGTGACGTACAAGGAGGAGCACCCTAAGAACAAGTCTGT
EST: GGCCTTCCAGTGCCTTCTTCGTTTTCAT GGAAGA-TTCCGTGTGACGTACAAGGAGGAGCACCCTAAGAACAAGTCTGTEST: gi|163994112|gb|ES210616.1|ES210616
genomic: GGCCTTCCAGTGCCTTCTTCGTTTTCATgtaatccttc ... tgatttgtagGGAAGATTTCCGTGTGACGTACAAGGAGGAGCACCCTAAGAACAAGTCTGT
EST: AAGATCCAAATAAACCTAAGAGGCCTTCCAGTGTCCTTCTTCGTTTTCAT GGAAGATTTCCGTGTGACGTACAEST: gi|125272191|gb|EL286276.1|EL286276
genomic: AAGATCCAAACAAACCTAAGAGGCCTTCCAGTG-CCTTCTTCGTTTTCATgtaatccttc ... tgatttgtagGGAAGATTTCCGTGTGACGTACA
EST: AAAGATCCAAACAAACCTAAGAGGCCTTCCAGTGCCTTCTTCGTTTTCAT GGAAGATTTCCGTGTGACG
genomic: AAAGATCCAAACAAACCTAAGAGGCCTTCCAGTGCCTTCTTCGTTTTCATgtaatccttc ... tgatttgtagGGAAGATTTCCGTGTGACG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTCTCTGTGACTAAGAAGCCTGCTAAGGGAGCCAAAGGTGCTGCTAAAGATCCAAACAAACCTAAGAGGCCTTCCAGTGCCTTCTTCGTTTTCATgtaatccttcgaatcttcacttttatctctgtttagtacttgtggtttgtttctatggaataactttattctggtaaaaagtttttgagtattgactttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggtaaaaa