1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TGTGATTGCAGATGGAATTGACAAGAATGGAAAGCCTCACAAGGTCAGACTTTACTCCATTGCAAGCAGCGCTCTTGGAGATCTCGGCAATTCTGAAACCgtaataaaccatttcctttacaaattttacgaggctttgttttgtctggttaagtgaatgaaggagttgtttcag
species | Arabidopsis thaliana |
transcript | AT1G20020.3 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTTACTCTATTGCAAGCAGCGCTCTTGGAGATCTCGGCAATTCTGAAACC GTTTCTTTGTGTGTTAAAAGACTTGTTTATACTAATGACCAAGGAGAGAEST: gi|125203376|gb|EL218330.1|EL218330
genomic: TTTACTCCATTGCAAGCAGCGCTCTTGGAGATCTCGGCAATTCTGAAACCgtaataaacc ... gttgtttcagGTTTCTTTGTGTGTTAAAAGACTTGTTTATACTAATGACCAAGGAGAGA
EST: TTTACTCCATTGCAAGCAGCGCTCTTGGAGATCTCGGCAATTCTGAAACC GTTTCTTTGTGTGTTAAAAGACTTGTTTATAEST: gi|124812369|gb|EH897235.1|EH897235
genomic: TTTACTCCATTGCAAGCAGCGCTCTTGGAGATCTCGGCAATTCTGAAACCgtaataaacc ... gttgtttcagGTTTCTTTGTGTGTTAAAAGACTTGTTTATA
EST: CTCCATTGCAAGCAGCGCTCTTGGAGATCTCGGCAATTCTGAAACC GTTTCTTTGTGTGTTAAAAGACTTEST: gi|86065487|gb|DR361244.1|DR361244
genomic: CTCCATTGCAAGCAGCGCTCTTGGAGATCTCGGCAATTCTGAAACCgtaataaacc ... gttgtttcagGTTTCTTTGTGTGTTAAAAGACTT
EST: ACTCCATTGCAAGCAGCGCTCTTGGAGATCTTCGGCAATTCTGAAAACCEST: gi|164120642|gb|ES121534.1|ES121534
genomic: ACTCCATTGCAAGCAGCGCTCTTGGAGATCT-CGGCAATTCTGAAA-CC
EST: TTTACTCCATTGCAAGCAGCGCTCTTGGAGATCTCGGCAATTCTGAAACC GTTTCTTTGTGTGTTAAAAGACTTGTTTATACTAAEST: gi|124743255|gb|EH834417.1|EH834417
genomic: TTTACTCCATTGCAAGCAGCGCTCTTGGAGATCTCGGCAATTCTGAAACCgtaataaacc ... gttgtttcagGTTTCTTTGTGTGTTAAAAGACTTGTTTATACTAA
EST: ATCTCGGCAATTCTGAAACC GTTTCTTTGTGTGTTAAAAGACTTGTTTATACTAATGACCAAGGAGAGACTEST: gi|124960086|gb|EL034778.1|EL034778
genomic: ATCTCGGCAATTCTGAAACCgtaataaacc ... gttgtttcagGTTTCTTTGTGTGTTAAAAGACTTGTTTATACTAATGACCAAGGAGAGACT
EST: CAATTCTGAAATC GTTTCTTTGTGTGTTAAAAGACTTGTTTATACTAATGACCAAGGAGAGACTEST: gi|116472061|gb|EG514653.1|EG514653
genomic: CAATTCTGAAACCgtaataaacc ... gttgtttcagGTTTCTTTGTGTGTTAAAAGACTTGTTTATACTAATGACCAAGGAGAGACT
EST: TTTACTCCATTGCAAGCAGCGCTCTTGGAGATCTCGGCAATTCTGAAACC GTTTCTTTGTGTGTTAAAAGACTTGTTTATACTAATGACCAAGGAGAGACTEST: gi|86065447|gb|DR361204.1|DR361204
genomic: TTTACTCCATTGCAAGCAGCGCTCTTGGAGATCTCGGCAATTCTGAAACCgtaataaacc ... gttgtttcagGTTTCTTTGTGTGTTAAAAGACTTGTTTATACTAATGACCAAGGAGAGACT
EST: TTTACTCCATTGCAAGCAGCGCTCTTGGAGATCTCGGCAATTCTGAAACC GTTTCTTTGTGTGTTEST: gi|125158342|gb|EL186985.1|EL186985
genomic: TTTACTCCATTGCAAGCAGCGCTCTTGGAGATCTCGGCAATTCTGAAACCgtaataaacc ... gttgtttcagGTTTCTTTGTGTGTT
EST: CAATTCTGAAACC GTTTCTTTGTGTGTTAAAAGACTTGTTTATACTAATGACCAAGGAGAGACTEST: gi|125317036|gb|EL331121.1|EL331121
genomic: CAATTCTGAAACCgtaataaacc ... gttgtttcagGTTTCTTTGTGTGTTAAAAGACTTGTTTATACTAATGACCAAGGAGAGACT
EST: GAGATCTCGGCAATTCTGAAACC GTTTCTTTGTGTGTTAAAAGACTTGTTTATACTAATGACCAAGGAGAGACTEST: gi|125195512|gb|EL210466.1|EL210466
genomic: GAGATCTCGGCAATTCTGAAACCgtaataaacc ... gttgtttcagGTTTCTTTGTGTGTTAAAAGACTTGTTTATACTAATGACCAAGGAGAGACT
EST: TTTACTCCATTGCAAGCAGCGCTCTTGGAGATCTCGGCAATTCTGAAACC GTTTCTTTGTGTGTTAAAAGAEST: gi|125187565|gb|EL202519.1|EL202519
genomic: TTTACTCCATTGCAAGCAGCGCTCTTGGAGATCTCGGCAATTCTGAAACCgtaataaacc ... gttgtttcagGTTTCTTTGTGTGTTAAAAGA
EST: CCATTGCAAGCAGCGCTCTTGGAGATCTCGGCAATTCTGAAACC GTTTCTTTGTGTGTTAAAAGACTTGTTTATACTAATGACCAAGGAGAGACTEST: gi|125021112|gb|EL093381.1|EL093381
genomic: CCATTGCAAGCAGCGCTCTTGGAGATCTCGGCAATTCTGAAACCgtaataaacc ... gttgtttcagGTTTCTTTGTGTGTTAAAAGACTTGTTTATACTAATGACCAAGGAGAGACT
EST: GGCAATTCTGAAACC GTTTCTTTGTGTGTTAAAAGACTTGTTTATACTAATGACCAAGGAGAGACTEST: gi|124993375|gb|EL065644.1|EL065644
genomic: GGCAATTCTGAAACCgtaataaacc ... gttgtttcagGTTTCTTTGTGTGTTAAAAGACTTGTTTATACTAATGACCAAGGAGAGACT
EST: TTTACTCCATTGCAAGCAGCGCTCTTGGAGATCTCGGCAATTCTGAAACC GTTTCTTTAGTGTGTTAAAAGACTTGTTTATACTAATGACCAAEST: gi|124765891|gb|EH856021.1|EH856021
genomic: TTTACTCCATTGCAAGCAGCGCTCTTGGAGATCTCGGCAATTCTGAAACCgtaataaacc ... gttgtttcagGTTTCTTT-GTGTGTTAAAAGACTTGTTTATACTAATGACCAA
EST: ATCTCGGCAATTCTGAAACC GTTTCTTTGTGTGTTAAAAGACTTGTTTATACTAATGACCAAGGAGAGACTEST: gi|124817256|gb|EH902122.1|EH902122
genomic: ATCTCGGCAATTCTGAAACCgtaataaacc ... gttgtttcagGTTTCTTTGTGTGTTAAAAGACTTGTTTATACTAATGACCAAGGAGAGACT
EST: TTTACTCCATTGCAAGCAGCGCTCTTGGAGATCTCGGCAATTCTGAAACC GTTTCTTTGTGEST: gi|47829155|gb|CK118839.1|CK118839
genomic: TTTACTCCATTGCAAGCAGCGCTCTTGGAGATCTCGGCAATTCTGAAACCgtaataaacc ... gttgtttcagGTTTCTTTGTG
EST: TTTACTCCATTGCAAGCAGCGCTCTTGGAGATCTCGGCAATTCTGAAACC GTTTCTTTGTGTGTTAAAAGACTTGTTTATACTAATGACCAAGGAGAGACTEST: gi|125263182|gb|EL277267.1|EL277267
genomic: TTTACTCCATTGCAAGCAGCGCTCTTGGAGATCTCGGCAATTCTGAAACCgtaataaacc ... gttgtttcagGTTTCTTTGTGTGTTAAAAGACTTGTTTATACTAATGACCAAGGAGAGACT
EST: CTCTTGGAGATCTCGGCAATTCTGAAACC GTTTCTTTGTGTGTTAAAAGACTTGTTTATACTAATGACCAAGGAGAGACTEST: gi|124711328|gb|EH802730.1|EH802730
genomic: CTCTTGGAGATCTCGGCAATTCTGAAACCgtaataaacc ... gttgtttcagGTTTCTTTGTGTGTTAAAAGACTTGTTTATACTAATGACCAAGGAGAGACT
EST: TTTACTCCATTGCAAGCAGCGCTCTTGGAGATCTCGGCAATTCTGAAACC GTTTCTTTGTGTGTTAAAAGACTTGTTTATACTAATG
genomic: TTTACTCCATTGCAAGCAGCGCTCTTGGAGATCTCGGCAATTCTGAAACCgtaataaacc ... gttgtttcagGTTTCTTTGTGTGTTAAAAGACTTGTTTATACTAATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTGATTGCAGATGGAATTGACAAGAATGGAAAGCCTCACAAGGTCAGACTTTACTCCATTGCAAGCAGCGCTCTTGGAGATCTCGGCAATTCTGAAACCgtaataaaccatttcctttacaaattttacgaggctttgttttgtctggttaagtgaatgaaggagttgtttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC