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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCACCCTACTGAGAAGAGAGATCTATATGATCCTGATCATGGAAAGAGAGTCTTAAGCATGGCCCCTGGACTTGAGAAACTCAATATTCTTCCATTTAGGgtaacacaaatcgattctgactgcaaaaccaaagtttcttgattatttgattatcggaatatgctgcttcaattcccaatcatgtgttctttgtatctttcag

Basic information

species Arabidopsis thaliana
transcript AT1G19920.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86077601|gb|DR373358.1|DR373358
EST:     TCTTAAGCATGGCCCCTGGACTTGAGAAACTCAATATTCTTCCATTTAGG                         GTTGCAGCTTACGATACAATCGAGAAGAAGATGGCGTTTTTCGATCCTTCT
genomic: TCTTAAGCATGGCCCCTGGACTTGAGAAACTCAATATTCTTCCATTTAGGgtaacacaaa ... tatctttcagGTTGCAGCTTACGATACAATCGAGAAGAAGATGGCGTTTTTCGATCCTTCT
EST: gi|124911494|gb|EH985574.1|EH985574
EST:     CTTAAGCATGGCCCCTGGACTTGAGAAACTCTAATATTCTTCCATTTAGG                         GTTGCAGCTTACGATACAATCGAGAAGAAGATGGCGT
genomic: CTTAAGCATGGCCCCTGGACTTGAGAAACTC-AATATTCTTCCATTTAGGgtaacacaaa ... tatctttcagGTTGCAGCTTACGATACAATCGAGAAGAAGATGGCGT
EST: gi|86034476|gb|DR330229.1|DR330229
EST:     TCTTAAGCATGGCCCCTGGACTTGAGAAACTCAATATTCTTCCATTTAGG                         GTTGCAGCTTACGATACAATCGAGA
genomic: TCTTAAGCATGGCCCCTGGACTTGAGAAACTCAATATTCTTCCATTTAGGgtaacacaaa ... tatctttcagGTTGCAGCTTACGATACAATCGAGA
EST: gi|86034470|gb|DR330223.1|DR330223
EST:     TCTTAAGCATGGCCCCTGGACTTGAGAAACTCAATATTCTTCCATTTAGG                         GTTGCAGCTTACGATACAATCGAGAAGAAGATGGCGTTTTTCGATCCTTCT
genomic: TCTTAAGCATGGCCCCTGGACTTGAGAAACTCAATATTCTTCCATTTAGGgtaacacaaa ... tatctttcagGTTGCAGCTTACGATACAATCGAGAAGAAGATGGCGTTTTTCGATCCTTCT
EST: gi|86034473|gb|DR330226.1|DR330226
EST:     TCTTAAGCATGGCCCCTGGACTTGAGAAACTCAATATTCTTCCATTTAGG                         GTTGCAGCTTACGATACAATCGAGAAGAAGATGGCGTTTTTCGATCCTTCT
genomic: TCTTAAGCATGGCCCCTGGACTTGAGAAACTCAATATTCTTCCATTTAGGgtaacacaaa ... tatctttcagGTTGCAGCTTACGATACAATCGAGAAGAAGATGGCGTTTTTCGATCCTTCT
EST: gi|86034472|gb|DR330225.1|DR330225
EST:     TCTTAAGCATGGCCCCTGGACTTGAGAAACTCAATATTCTTCCATTTAGG                         GTTGCAGCTTACGATACAATCGAGAAGAAGATGGCGTTTTTCGATCCTTCT
genomic: TCTTAAGCATGGCCCCTGGACTTGAGAAACTCAATATTCTTCCATTTAGGgtaacacaaa ... tatctttcagGTTGCAGCTTACGATACAATCGAGAAGAAGATGGCGTTTTTCGATCCTTCT