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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCTTGGAATGGTTCGACCTGCTTGGAGACCTCAAAGAGGTCTTCCTGAAAACTCTGTCTCTGTTCTTCGCGCTTGGCTCTTTGAACATTTCCTTCATCCgtaagtgtttcttctctcacaagtcacaagtcacaatctttcaatctcccagtacaaaacatttagagagactctatgtttttcttctgttttttttatttgtag

Basic information

species Arabidopsis thaliana
transcript AT1G19700.3
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G19700.3 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: LOC_Os12g43950.1 (Oryza sativa), 5'ss of exon 4
AGCTTGGAATGGTTCGACC---TGCTTGGAGACCTCAAAGAGGTCTTCCTGAAAACTCTGTCTCTGTTCTTCGCGCTTGGCTCTTTGAACATTTCCTTCATCCgtaagtgtt-tcttctctcacaagtcacaagtcacaatctttcaatctcccagtacaaaacatttagagagactctatgtttttcttctgttttttttatttgtag
     || ||| ||| ||     || |||||||| || || || || ||||||||||||||  |  |||||||||||||||| |||||||| ||||| ||||||||||| |  || | | |              ||    || |     |  |  |    | | |  | |   | | |                              
---ACGGTATGATTCCACAAAACGCCTGGAGACCACAGAGGGGACTGCCTGAAAACTCTGTTACAATTCTTCGCGCTTGGCTGTTTGAACACTTCCTCCATCCgtaagtttcatcctttatgctgttctttccagcattccctcttttcttttctcttatcatcctccacaacaattttgcag--------------------------

upper sequence: AT1G19700.3 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GRMZM2G011588_T03 (Zea mays), 5'ss of exon 4
AGCTTGGAATGGTTCGACC---TGCTTGGAGACCTCAAAGAGGTCTTCCTGAAAACTCTGTCTCTGTTCTTCGCGCTTGGCTCTTTGAACATTTCCTTCATCCgtaagtgtttcttctctcacaagtcacaagtcacaatctttcaatctcccagtacaaaacatttagagagactctatgtttttcttctgttttttttatttgtag
    ||| ||| | |  |     |||||||| || || ||||| || |||||||| || |||||  |||| || |||||||| ||||||||||||||||| |||||||| ||||  ||     || | | |  | |   ||  |||  | |||  |       ||||      |  | ||| |     |||                 
---ATGGTATGCTACAGCAAAACGCTTGGAGGCCACAGAGAGGACTACCTGAAAATTCAGTCTCGATTCTCCGGGCTTGGCTTTTTGAACATTTCCTTCACCCgtaagtttttccgctt----aacttagagat-atgttcactcacccccccttttt----tatttgttctcatgccatgctgacaatcttag--------------