Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCTTCATCAAGTGATCAAGGCGAATGATGATTTGACTCCTGAGCATTATCAGTTTTTCTTGTACCAGCTTCTTCGTGGTCTGAAATATGTTCACGCAGgttagtttctggttttacacattggtctctttcgatcctcatgatttttgttatagataatattgaaacacttaagggttctctgttttcag

Basic information

species Arabidopsis thaliana
transcript AT1G18150.3
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G18150.3 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA08G05700.1 (Glycine max), 5'ss of exon 2
GATCTTCATCAAGTGATCAAGGCGAATGATGATTTGACTCCTGAGCATTATCAGTTTTTCTTGTACCAGCTTCTTCGTGGTCTGAAATATGTTCACGCAGgttagtttctggttttacacattggtctctttcgatcctcatgatttttgttatagataatattgaaacacttaagggttctctgttttcag
|| || |||||||| |||||||| ||||||||| | |||||||||||  |||| |||||||||||||| |||||| | || ||||||||| | ||  |||||          ||  |  | ||  | |     | ||||  ||| |||| |        ||||| ||  | |  |   || |    || |||
GACCTCCATCAAGTAATCAAGGCAAATGATGATCTTACTCCTGAGCACCATCAATTTTTCTTGTACCAACTTCTTAGGGGCCTGAAATATATACATACAGgt---------attgcatcc-ttattataaccaggtcct--tgacttttttagatagagatattaaactagtgtatcatttttc--ttgcag

upper sequence: AT1G18150.3 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA05G33980.1 (Glycine max), 5'ss of exon 2
GATCTTCATCAAGTGATCAAGGCGAATGATGATTTGACTCCTGAGCATTATCAGTTTTTCTTGTACCAGCTTCTTCGTGGTCTGAAATATGTTCACGCAGgt-tagtttctggttttacacattggtctctttcgatcctcatgatttttgttatagataatattgaaacacttaagggttctctgttttcag
|| || |||||||| |||||||| ||||| ||| | |||||||||||  ||||||||||||||||||| |||||| | || ||||||||| | ||  ||||| | || ||    ||   |||  |  ||   | ||         |||||   |||| | ||||| ||  | |  |   || |    || |||
GACCTCCATCAAGTAATCAAGGCAAATGACGATCTTACTCCTGAGCACCATCAGTTTTTCTTGTACCAACTTCTTAGGGGCCTGAAATATATACATACAGgtattgtatccttattatgacaaggtccttccttgac--------ttttttagatag-tgatattaaactagtatatcatttttc--ttgcag

upper sequence: AT1G18150.3 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA09G30790.1 (Glycine max), 5'ss of exon 2
GATCTTCATCAAGTGATCAAGGCGAATGATGATTTGACTCCTGAGCATTATCAGTTTTTCTTGTACCAGCTTCTTCGTGGTCTGAAATATGTTCACGCAGgttagtttctggttttacacattggtctctttcgatcctcatgatttttgttatagataatattgaaacacttaagggttctctgttttcag
|| ||||||||||| || ||| | ||||||||| | || || ||||| || || |||||||||||||| |||||||| || || |||| | | ||  |||||   |   ||   |||     | | || || |     |  |||| ||      | |||| |||      |||   |               
GACCTTCATCAAGTAATTAAGTCAAATGATGATCTTACCCCCGAGCACTACCAATTTTTCTTGTACCAACTTCTTCGAGGCCTCAAATTTATACATACAGgt--atccttgtaattaagtccttgactgttgcaga--tagtgatattaaactaaaataacattc---ttcttgcag---------------

upper sequence: AT1G18150.3 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv17s0000g02570.t01 (Vitis vinifera), 5'ss of exon 2
GATCTTCATCAAGTGATCAAGGCGAATGATGATTTGACTCCTGAGCATTATCAGTTTTTCTTGTACCAGCTTCTTCGTGGTCTGAAATATGTTCACGCAGgttagtttctggttttacacattggtctctttcgatcctcatgatttt-tgttatagataat-attga--aacacttaagggttctctgttttcag
|||||||||||||| || ||||| || |||||| | ||||| ||||| ||||| ||||||||||||||||||||||| ||||| |||||| | ||  |||||| ||  ||  |   | | |||     ||  |  |     || |||| |||  |  ||    | | |  || | || | ||||      || |||
GATCTTCATCAAGTAATTAAGGCAAACGATGATCTTACTCCCGAGCACTATCAATTTTTCTTGTACCAGCTTCTTCGGGGTCTAAAATATATACATACAGgttggtg-cttttcagagatattatagcctcaccgtttgtttgcttttatgtcctgaatggccactaataaaaattttatggtttc----ttccag

upper sequence: AT1G18150.3 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv01s0011g04920.t01 (Vitis vinifera), 5'ss of exon 2
GATCTTCATCAAGTGATCAAGGCGAATGATGATTTGACTCCTGAGCATTATCAGTTTTTCTTGTACCAGCTTCTTCGTGGTCTGAAATATGTTCACGCAGgttagtttctggttttacacattggtctctttcgatcctcatgatttttgttatagataatattgaaacacttaagggttctctgtttt-cag
|| ||||| ||||| || ||||| ||||||||| | || || ||||||||||| |||||||| |||||||||||||| | ||| |||||| | ||  |||||| |    | |||| | |   ||  |  | |||    ||    |||| ||| || ||  |     | || | |     ||| | |||| |||
GACCTTCACCAAGTAATTAAGGCAAATGATGATCTCACGCCCGAGCATTATCAATTTTTCTTATACCAGCTTCTTCGAGCTCTAAAATATATACATACAGgttggacctttgtttaaaattgtg-ccattatcgtatttc----ttttggttctatattctcaatgaccaataatattgtctttattttgcag

upper sequence: AT1G18150.3 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: PP1S80_71V6.2 (Physcomitrella patens), 5'ss of exon 2
GATCTTCATCAAGTGATCAAGGCGAATGATGATTTGACTCCTGAGCATTATCAGTTTTTCTTGTACCAGCTTCTTCGTGGTCTGAAATATGTTCACGCAGgttagtttctggttttacacattggtctctttcgatcctcatgatttttgttatagataatattgaaacacttaagggttctctgttttcag--------
|| ||||| ||||||||||| || |||||||||||||| |||||||||||||| || || ||||||||||| ||  | |  || || ||| | ||  |||||  ||  |    |||  |      |  ||| |  ||       |  |   | |    | ||||   |  |    |  |||  ||  ||  |        
GACCTTCACCAAGTGATCAAAGCCAATGATGATTTGACCCCTGAGCATTATCAATTCTTTTTGTACCAGCTACTGAGGGCCCTCAAGTATATCCATACAGgtaggtgccaaagtttggagtggaattacttccattcggttatgtactaactttgtgcagtatttctattcccgggttttcgttgggtttcgttggctat

upper sequence: AT1G18150.3 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: PP1S87_157V6.2 (Physcomitrella patens), 5'ss of exon 2
GATCTTCATCAAGTGATCAAGGCGAATGATGATTTGACTCCTGAGCATTATCAGTTTTTCTTGTACCAGCTTCTTCGTGGTCTGAAATATGTTCACGCAGgttagtttctggttttacacattggtctctttcgatcc-tcatgatttttgttatagataatattgaaacacttaagggttctctgt---tttcag----
||  | || ||||| ||||| || |||||||||||||| |||||||||||||| || || ||||||||||| ||  | | ||| || ||| | ||  |||||  |  ||   ||||  |   |  |  |||||  |   |  ||     | ||  |  | || ||   |    |  | ||   |      || |||    
GACTTGCACCAAGTTATCAAAGCTAATGATGATTTGACCCCTGAGCATTATCAATTCTTTTTGTACCAGCTACTGAGGGCTCTCAAGTATATCCATACAGgtgggcgtcacattttgtagtgtattgactttcatttagttgtggagaatatttaacttgatcttcgtagggcttggtgtcagcaacctattccagctta