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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGTGGTTGATACTACAGGAGCTGGGGATACTTTCACTGCAGCATTTGCAGTCGCTATGGTAGAGGGCAAGTCCCATGAGGAATGCTTGAGATTTGCTGgtaataattagtgacataaatctggttttctaacccgtaattcagattagttttgtctcacttttttccgatgcctgcag

Basic information

species Arabidopsis thaliana
transcript AT1G17160.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G17160.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA13G33840.1 (Glycine max), 5'ss of exon 3
CAAGTGGTTGATACTACAGGAGCTGGGGATACTTTCACTGCAGCATTTGCAGTCGCTATGGTAGAGGGCAAGTCCCATGAGGAATGCTTGAGATTTGCTGgtaataattagtgacataaatctggttttctaacccgtaattcagattagttttgtctcacttttttccgatgcctgcag----------
  ||| ||||||||||| || || || |||||||| ||||| || ||||| || ||  |||| |||||||||||| |  |||||||| | ||||||||||||    ||    ||   ||||  | |||  | |       |||   || |   |     | || | || ||   ||              
ACAGTCGTTGATACTACTGGTGCCGGTGATACTTTTACTGCTGCTTTTGCTGTGGCCTTGGTTGAGGGCAAGTCCAAAAAGGAATGCCTCAGATTTGCTGgtgtgtatggcagaatgaaattcgttttctttatagagttttctctttggaaattggaaaattgtgtctgactactatgttctgcaacag