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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGTCATTTTCACATTGCTGTTAGTTGCATTGCTCAGTCACTCAAGGCTCATATTATCAATCGGTCAAATGATGAAATAGCTATATGTTTCTTTAACACTgtaagtttctggatgaaacgtgttgtattgttttctttcttttttggggtctttacttctttgtttgctaataattttgttgtcactggcag

Basic information

species Arabidopsis thaliana
transcript AT1G16970.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G16970.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: LOC_Os07g08729.1 (Oryza sativa), 5'ss of exon 3
AAGTCATTTTCACATTGCTGTTAGTTGCATTGCTCAGTCACTCAAGGCTCATATTATCAATCGGTCAAATGATGAAATAGCTATATGTTTCTTTAACACTgtaagtttctggatgaaacgtgttgtattgttttctttcttttttggggtctttacttctttgtttgctaat-aattttgttgtcactggcag---------
 |  |||||||| |     || |  |||||  | ||  | || ||| | || ||||||  | | ||  |||||||| | |||||||||||||||||||| |||||   ||   | ||      ||| |  | || | | ||  |  |  |||     | || ||  |||| | |||||  |||    |   |          
GACACATTTTCATACGATAGTGAACTGCATCACACATGCGCTGAAGACGCAGATTATCGGTAGATCCTATGATGAAGTCGCTATATGTTTCTTTAACACGgtaaga--ctaattaaagaactatgtgtcatcttatatattgctatgactctgcttctattagtcagctagttaatttctttgctgtttaaatctatgattt

upper sequence: AT1G16970.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GRMZM2G414496_T07 (Zea mays), 5'ss of exon 3
AAGTCATTTTCACATTGCTGTTAGTTGCATTGCTCAGTCACTCAAGGCTCATATTATCAATCGGTCAAATGATGAAATAGCTATATGTTTCTTTAACACTgtaagtttctggatgaaacgtgttgtat-----tgttttctttcttttttggggtctttacttctttgtttgctaa---taattttgttgtcactggcag
 |  ||||| || |    |||||  |||||  |  |||| || ||| | || |||||   | | ||  |||||||| | || ||||||||||||||||||||||| |  |      | |     | ||     |||    ||||   ||    ||    |||  | | | | | ||   | ||     | |   | | | 
GACACATTTCCATACCATTGTTAACTGCATCACAGAGTCTCTGAAGACACAAATTATTGGTAGATCTTATGATGAAGTCGCAATATGTTTCTTTAACACTgtaagctctttctcacatcagtaagcatacacctgtcacatttccagttctatgttagaactcttctttgtacaaaatgttatccaactcttctttgtat