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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTTTTCTCTCCGGAGGCGGCTTGTGAAGTGATCGAAGCAGAAAGACATTCCCATGTTTTCTATGAGGCTGAACCTGATATCTGGATGGTTATGgtaaggcattgtcttacttttcttttgttatagcacaatgttttctatgaatgatgcatcctatggtgtcttagcaatgtaaataaacaagatctgatctatacattggcag

Basic information

species Arabidopsis thaliana
transcript AT1G16020.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G16020.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA05G34400.1 (Glycine max), 5'ss of exon 2
ACTTTTCTCTCCGGAGGCGGCTTGTGAAGTGATCGAAGCAGAAAGACATTCCCATGTTTTCTATGAGGCTGAACCTGATATCTGGATGGTTATGgtaaggcattgtcttacttttcttttgttatagcacaatgttttctatgaatgatgcatcctatggtgtcttagcaatgtaaataaacaagatctgatctatacattggcag
| | ||||| || ||||| || || || || |||||||||||||||||||| ||||||||||| ||||| ||||| ||||||||||| || |||||    | || ||    || || | | ||      ||   || || |   |  |||| |   || |||| ||  || |  | || |    | |    | ||           
AATCTTCTCGCCAGAGGCTGCCTGCGACGTCATCGAAGCAGAAAGACATTCTCATGTTTTCTACGAGGCCGAACCCGATATCTGGATAGTCATGgtt---ccttctcccgtttctcctctctttcttttca---ttctcaaatcacaatgcttggaattgtgtatt--catttgatatgagtttgtttccttgtag----------

upper sequence: AT1G16020.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA08G05260.1 (Glycine max), 5'ss of exon 2
ACTTTTCTCTCCGGAGGCGGCTTGTGAAGTGATCGAAGCAGAAAGACATTCCCATGTTTTCTATGAGGCTGAACCTGATATCTGGATGGTTATGgtaaggcattgtcttacttttcttttgttatagcacaatgttttctatgaatgatgcatcctatggtgtcttagcaatgtaaataaacaagatctgatctatacattggcag
| | |||||||| ||  | ||||| || || |||||||| ||||| ||||| ||||||||||| ||||| ||||| ||||||||||| || || ||  |      |||| | |||||  | || |       | |||||  |     ||   |   || |||| |    | | ||                               
AATCTTCTCTCCAGACTCTGCTTGCGAGGTCATCGAAGCTGAAAGGCATTCTCATGTTTTCTACGAGGCCGAACCCGATATCTGGATAGTCATTgttcgttcacttcttccatttctcctctttt-------tcttttcattctccaatatgtgtaattgtgtatccatattttag------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19874695|gb|AU235526.1|AU235526
EST:     GACATTCCCATGTTTTCTATGAGGCTGAACCTGATATCTGGATGGTTATG                         GTTGTGGAGAAAAATAAGGAGACAGGAGCGATATGGAGGATCGATGCATTA
genomic: GACATTCCCATGTTTTCTATGAGGCTGAACCTGATATCTGGATGGTTATGgtaaggcatt ... acattggcagGTTGTGGAGAAAAATAAGGAGACAGGAGCGATATGGAGGATCGATGCATTA