1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TTCGAGCTCTGGTTTTTCTCTTCCGGCGAGATGCACAGAACATGCAGCCAGAGgtttggtgtttctattgatattgtgatttagcctcattgatggtctatttgaaatttctaaacttgcaagtatcgttcggtttttcttgtag
species | Arabidopsis thaliana |
transcript | AT1G14530.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AGCTCTGGTTTTTCMTCTTCCGGCGAGATGCACAGAACATGCAGCCAGAG ATTTCTGCAACATATCTTACTTGATATYCCAAGTCTTTGCTTTCTTCACTAEST: gi|116477218|gb|EG519810.1|EG519810
genomic: AGCTCTGGTTTTTC-TCTTCCGGCGAGATGCACAGAACATGCAGCCAGAGgtttggtgtt ... tttcttgtagATT-CTGCAACATATCTTACTTGATATTCCAAGTCTT-GCTTTCTTCACTA
EST: GAGCTCTGGTTTTTCTCTTCCGGCGAGATGCACAGAACATGCAGCCAGAG ATTCTGCAACATATCTTACTTGATATTCCAAGTCTTGCTTTCTTCACTACAEST: gi|86039852|gb|DR335607.1|DR335607
genomic: GAGCTCTGGTTTTTCTCTTCCGGCGAGATGCACAGAACATGCAGCCAGAGgtttggtgtt ... tttcttgtagATTCTGCAACATATCTTACTTGATATTCCAAGTCTTGCTTTCTTCACTACA
EST: GAGCTCTGGTTTTTCTCTTCCGGCGAGATGCACAGACCATGCAGCCAGAG ATTCTGCAACATATEST: gi|116477220|gb|EG519812.1|EG519812
genomic: GAGCTCTGGTTTTTCTCTTCCGGCGAGATGCACAGAACATGCAGCCAGAGgtttggtgtt ... tttcttgtagATTCTGCAACATAT
EST: GAGCTCTGGTTTTTCTCTTCCGGCGAGATGCACAGAACATGCAGCCAGAG ATTCTGCAACATATCTTACTTGATATTCCAAGTCTTGCTTTCTTCACTACAEST: gi|86039850|gb|DR335605.1|DR335605
genomic: GAGCTCTGGTTTTTCTCTTCCGGCGAGATGCACAGAACATGCAGCCAGAGgtttggtgtt ... tttcttgtagATTCTGCAACATATCTTACTTGATATTCCAAGTCTTGCTTTCTTCACTACA
EST: GAGCTCTGGTTTTTCTCTTCCGGCGAGATGCACAGAACATGCAGCCAGAG ATTCTGCAACATATCTTACTTGATATTCCAAGTCTTGCTTTCTTCACTACAEST: gi|86039848|gb|DR335603.1|DR335603
genomic: GAGCTCTGGTTTTTCTCTTCCGGCGAGATGCACAGAACATGCAGCCAGAGgtttggtgtt ... tttcttgtagATTCTGCAACATATCTTACTTGATATTCCAAGTCTTGCTTTCTTCACTACA
EST: GAGCTCTGGTTTTTCTCTTCCGGCGAGATGCACAGAACATGCAGCCAGAG ATTCTGCAACATATCTTACTTGATATTCCAAGTCEST: gi|86039847|gb|DR335602.1|DR335602
genomic: GAGCTCTGGTTTTTCTCTTCCGGCGAGATGCACAGAACATGCAGCCAGAGgtttggtgtt ... tttcttgtagATTCTGCAACATATCTTACTTGATATTCCAAGTC
EST: GAGCTCTGGTTTTTCTCTTCCGGCGAGATGCACAGAACATGCAGCCAGAG ATTBTGCAACATATCTTACTTGATATTCCAAGTCTTGCTTTCTTCACTACAEST: gi|86039851|gb|DR335606.1|DR335606
genomic: GAGCTCTGGTTTTTCTCTTCCGGCGAGATGCACAGAACATGCAGCCAGAGgtttggtgtt ... tttcttgtagATTCTGCAACATATCTTACTTGATATTCCAAGTCTTGCTTTCTTCACTACA
EST: GAGCTCTGGTTTTTCTCTTCCGGCGAGATGCACAGAACATGCAGCCAGAG ATTCTGCAACATATCTTACTTGATATTCCAAGTCTTGCTTTCTTCACTACA
genomic: GAGCTCTGGTTTTTCTCTTCCGGCGAGATGCACAGAACATGCAGCCAGAGgtttggtgtt ... tttcttgtagATTCTGCAACATATCTTACTTGATATTCCAAGTCTTGCTTTCTTCACTACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCGAGCTCTGGTTTTTCTCTTCCGGCGAGATGCACAGAACATGCAGCCAGAGgtttggtgtttctattgatattgtgatttagcctcattgatggtctatttgaaatttctaaacttgcaagtatcgttcggtttttcttgtag
- - - - - - - - - - - - - GAGATG