Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGCTCTGGTTTTCTGGGAAACGAGGCGTTCTGATTTTGGAGTTTCAATGGGTCATCATATTGCCACTCTTATTCTTATTGTTCTCTCATACGTATGTAGgtatgcttccatcgtcacatcctattctatactgaaaaacagaactgattccttttgtccacattgttttgatcttcttgtttctttttctctttatcgctgtag

Basic information

species Arabidopsis thaliana
transcript AT1G13580.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G13580.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA16G12080.1 (Glycine max), 5'ss of exon 3
TTGCTCTGGTTTTCTGGGAAACGAGGCGTTCTGATTTTGGAGTTTCAATGGGTCATCATATTGCCACTCTTATTCTTATTGTTCTCTCATACGTATGTAGgtatgcttccatcgtcacatcctattctatactgaaaaacagaactgattccttttgtccacattgttttgatcttcttgtttctttttctctttatcgctgtag
||||| |  | || |||||||||||||| || ||||||||||| || ||| |||||||| |||| ||| | |||||||||||||| || ||| | | |||||||  ||   || |    | |  || | |  ||  |  ||    |  ||    |      |      ||||| || ||  ||   ||| |||  ||     |  
TTGCTTTAATATTTTGGGAAACGAGGCGCTCCGATTTTGGAGTGTCCATGAGTCATCATGTTGCTACTGTAATTCTTATTGTTCTGTCTTACATTTTTAGgtatctttt--tcattcacttccgttttgtcttgtcattcaagcttttttgtcctcaagttcgac-cgttgattttgtttatttcatttgtctgaatttactt--

upper sequence: AT1G13580.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA08G36370.1 (Glycine max), 5'ss of exon 3
TTGCTCTGGTTTTCTGGGAAACGAGGCGTTCTGATTTTGGAGTTTCAATGGGTCATCATATTGCCACTCTTATTCTTATTGTTCTCTCATACGTATGTAGgtatgcttccatcgtcacatcctattctatactgaaaaacagaactgattccttttgtccacattgttttgatcttcttgtttctttttctctttatcgctgtag
||||| || | || |||||||||||||| || || |||||||| || ||| |||||||| |||| ||| | ||||| |||||||| || ||| | |  ||||||| ||      |||| |     | | |  ||  |  ||     | ||  || |   ||  ||   |   | || | | || | ||| | |   |   | |  
TTGCTTTGATATTTTGGGAAACGAGGCGCTCCGACTTTGGAGTGTCCATGAGTCATCATGTTGCTACTGTAATTCTCATTGTTCTGTCTTACATTTTCAGgtatgttttttcattcacttgagtgtttctcttgtcattcaa----gcttttttgtcctcaagtttgatcagttttgtagattttatttatttcattttgtctg-

upper sequence: AT1G13580.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv01s0010g01110.t01 (Vitis vinifera), 5'ss of exon 3
TTGCTCTGGTTTTCTGGGAAACGAGGCGTTCTGATTTTGGAGTTTCAATGGGTCATCATATTGCCACTCTTATTCTTATTGTTCTCTCATACGTATGTAGgtatgcttccatcgtcacatcctattctatactgaaaaacagaactgattccttttgtccacattgttttgatcttcttgtttctttttctctttatcgctgtag--
||||| || |||| |||||||| ||||| |||||||||||||| ||||||||||||||| | || ||| ||||||| ||||| || || ||| |||  ||||||| ||     |    |    |   | ||       |  |  ||||   |  |   |||    | | ||   ||| |     |||  || ||||  |    |   
TTGCTTTGATTTTTTGGGAAACAAGGCGGTCTGATTTTGGAGTGTCAATGGGTCATCATGTGGCAACTTTTATTCTCATTGTGCTGTCTTACATATTCAGgtatgtttg----gcagaagttcagcttgtagcttggcat-gttctgaacaccat-aaccatgaggatgtggg-ttcataccaatttacctatttaaagtaaaacag