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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGCCAAATGATGGAATGAGACTCATTATAGCGACATTCGTAGGAATAGTTGTCGGTTTCTTCTTGGGGATATCTTTCCCTACACTATCACTAACAAAAgtgagctatatctttagctttttgttaatattttatgctctcatgactttatgcttaatgtgttgtttcatgtggccaacttgtaaactttcag

Basic information

species Arabidopsis thaliana
transcript AT1G13000.2
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124855098|gb|EH939535.1|EH939535
EST:     TTGTCGGTTTCTTCTTGGGGATATCTTTCCCTACACTATCACTAACAAAA                         CTAAATTTTCC
genomic: TTGTCGGTTTCTTCTTGGGGATATCTTTCCCTACACTATCACTAACAAAAgtgagctata ... aaactttcagCTAAATTTTCC
EST: gi|86062374|gb|DR358131.1|DR358131
EST:     TTGTCGGTTTCTTCTTGGGGATATCTTTCCCTACACTATCACTAACAAAA                         CTAAATTTTCCCTCTGGCATTCTTCCCTCTGTTGATATTACTTACGTAGAA
genomic: TTGTCGGTTTCTTCTTGGGGATATCTTTCCCTACACTATCACTAACAAAAgtgagctata ... aaactttcagCTAAATTTTCCCTCTGGCATTCTTCCCTCTGTTGATATTACTTACGTAGAA