1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TTGACGCTGATGTCAAACCTTCAGGAGACTCAGCTCTCTCTGTTGATGGAAAGATCATCAAGATTGTATCTGATCGTAACCCATCTAATCTCCCCTGGGGgtaagttaaaacaacacttctcatatcatttgaattgaatcaacccagttagatctaaacctggtgatgatgtttag
species | Arabidopsis thaliana |
transcript | AT1G12900.3 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AAGATCATCAAGATTGTATCTGATCGTAACCCATCTAATCTCCCCTGGGG GGAACTAGGCATTGACTTAGTTATCGAAGGAACCGGAGTGTTTGTTGACAGEST: gi|125312743|gb|EL326828.1|EL326828
genomic: AAGATCATCAAGATTGTATCTGATCGTAACCCATCTAATCTCCCCTGGGGgtaagttaaa ... tgatgtttagGGAACTAGGCATTGACTTAGTTATCGAAGGAACCGGAGTGTTTGTTGACAG
EST: AGATCATCAAGATTGTATCTGATCGTAACCCATCTAATCTCCCCGTGGGG GGAACTAGGCATTGACEST: gi|125307950|gb|EL322035.1|EL322035
genomic: AGATCATCAAGATTGTATCTGATCGTAACCCATCTAATCTCCCC-TGGGGgtaagttaaa ... tgatgtttagGGAACTAGGCATTGAC
EST: AAGATCATCAAGATTGTATCTGATCGTAACCCATCTAATCTCCCCTGGGG GGAACTAGGCATTGACTTAGTTATCGAAGGAACCGGAGTGEST: gi|125134688|gb|EL175429.1|EL175429
genomic: AAGATCATCAAGATTGTATCTGATCGTAACCCATCTAATCTCCCCTGGGGgtaagttaaa ... tgatgtttagGGAACTAGGCATTGACTTAGTTATCGAAGGAACCGGAGTG
EST: TATCTGATCGTAACCCATCTAATCTCCCCT-GGG GGAACTAGGCATTGACTTAGTTATCGAAGGAACCGGAGTGTTTGTTGACAGEST: gi|125194416|gb|EL209370.1|EL209370
genomic: TATCTGATCGTAACCCATCTAATCTCCCCTGGGGgtaagttaaa ... tgatgtttagGGAACTAGGCATTGACTTAGTTATCGAAGGAACCGGAGTGTTTGTTGACAG
EST: CCATCTAATCTCCCCT-GGG GGAACTAGGCATTGACTTAGTTATCGAAGGAACCGGAGTGTTTGTTGACAGEST: gi|124866170|gb|EH950607.1|EH950607
genomic: CCATCTAATCTCCCCTGGGGgtaagttaaa ... tgatgtttagGGAACTAGGCATTGACTTAGTTATCGAAGGAACCGGAGTGTTTGTTGACAG
EST: TCGTAACCCATCTAATCTCCCCTGGGG GGAACTAGGCATTGACCTAGTTATCGAAGGAACCGGAGTGTTTGTTGACAGEST: gi|124944734|gb|EL020807.1|EL020807
genomic: TCGTAACCCATCTAATCTCCCCTGGGGgtaagttaaa ... tgatgtttagGGAACTAGGCATTGACTTAGTTATCGAAGGAACCGGAGTGTTTGTTGACAG
EST: ATTGTATCTGATCGTAACCCATCTAATCTCCCCTGGGG GGAACTAGGCATTGACTTAGTTATCGAAGGAACCGGAGTGTTTGTTGACAEST: gi|125116731|gb|EL166154.1|EL166154
genomic: ATTGTATCTGATCGTAACCCATCTAATCTCCCCTGGGGgtaagttaaa ... tgatgtttagGGAACTAGGCATTGACTTAGTTATCGAAGGAACCGGAGTGTTTGTTGACA
EST: CTAATCTCCCCT-GGG GGAACTAGGCATTGACTTAGTTATCGAAGGAACCGGAGTGTTTGTTGACAGEST: gi|124759772|gb|EH849902.1|EH849902
genomic: CTAATCTCCCCTGGGGgtaagttaaa ... tgatgtttagGGAACTAGGCATTGACTTAGTTATCGAAGGAACCGGAGTGTTTGTTGACAG
EST: AAGATCATCAAGATTGTATCTGATCGTAACCCATCTAATCTCCCCTGGGG GGAACTAGGCATTGAEST: gi|125033313|gb|EL105582.1|EL105582
genomic: AAGATCATCAAGATTGTATCTGATCGTAACCCATCTAATCTCCCCTGGGGgtaagttaaa ... tgatgtttagGGAACTAGGCATTGA
EST: TTGTATCTGATCGTAACCCATCTAATCTCCCCT-GGG GGAACTAGGCATTGACTTAGTTATCGAAGGAACCGGAGTGTTTGTTGACAGEST: gi|124744027|gb|EH835189.1|EH835189
genomic: TTGTATCTGATCGTAACCCATCTAATCTCCCCTGGGGgtaagttaaa ... tgatgtttagGGAACTAGGCATTGACTTAGTTATCGAAGGAACCGGAGTGTTTGTTGACAG
EST: TCGTAACCCATCTAATCTCCCCTGGGG GGAACTAGGCATTGACTTAGTTATCGAAGGAACCGGAGTGTTTGTTGACAGEST: gi|125187108|gb|EL202062.1|EL202062
genomic: TCGTAACCCATCTAATCTCCCCTGGGGgtaagttaaa ... tgatgtttagGGAACTAGGCATTGACTTAGTTATCGAAGGAACCGGAGTGTTTGTTGACAG
EST: ATCGTAACCCATCTAATCTCCCCT-GGG GGAACTAGGCATTGACTTAGTTATCGAAGGAACCGGAGTGTTTGTTGACAGEST: gi|125253918|gb|EL268003.1|EL268003
genomic: ATCGTAACCCATCTAATCTCCCCTGGGGgtaagttaaa ... tgatgtttagGGAACTAGGCATTGACTTAGTTATCGAAGGAACCGGAGTGTTTGTTGACAG
EST: AAGATCATCAAGATTGTATCTGATCGTAACCCATCTAATCTCCCGTGGGG G-AACTAGGCATTGACTTAGTTATCGAAGGAACCGGAGTGTEST: gi|125193074|gb|EL208028.1|EL208028
genomic: AAGATCATCAAGATTGTATCTGATCGTAACCCATCTAATCTCCCCTGGGGgtaagttaaa ... tgatgtttagGGAACTAGGCATTGACTTAGTTATCGAAGGAACCGGAGTGT
EST: ACCCATCTAATCTCCCCT-GGG GGAACGTAGGCATTGACTTAGTTATCGAAGGAACCGGAGTGTTTGTTGACAEST: gi|116473086|gb|EG515678.1|EG515678
genomic: ACCCATCTAATCTCCCCTGGGGgtaagttaaa ... tgatgtttagGGAAC-TAGGCATTGACTTAGTTATCGAAGGAACCGGAGTGTTTGTTGACA
EST: AAGATCATCAAGATTGTATCTGATCGTAACCCATCTAATCCCCCCTGGGG GGAACTAGGCATTGACTTAGTTATCGAAGGAACCGGAGTGTTTGTTGACAGEST: gi|125281167|gb|EL295252.1|EL295252
genomic: AAGATCATCAAGATTGTATCTGATCGTAACCCATCTAATCTCCCCTGGGGgtaagttaaa ... tgatgtttagGGAACTAGGCATTGACTTAGTTATCGAAGGAACCGGAGTGTTTGTTGACAG
EST: AAGATCATCAAGATTGTATCTGATCGTAACCCATCTAATCTCCCCTGGGG GGAACTAGGCATTGACTTAGTTATCGAAGEST: gi|125164324|gb|EL191021.1|EL191021
genomic: AAGATCATCAAGATTGTATCTGATCGTAACCCATCTAATCTCCCCTGGGGgtaagttaaa ... tgatgtttagGGAACTAGGCATTGACTTAGTTATCGAAG
EST: AAGATCATCAAGATTGTATCTGATCGTAACCCATCTAATCTCCCCTGGGG G-AACTAGGCATTGACTTAGTTEST: gi|125125261|gb|EL170795.1|EL170795
genomic: AAGATCATCAAGATTGTATCTGATCGTAACCCATCTAATCTCCCCTGGGGgtaagttaaa ... tgatgtttagGGAACTAGGCATTGACTTAGTT
EST: AAGATCATCAAGATTGTATCTGATCGTAACCCATCTAATCTCCCCTGGGG G-AACTAGGCATTGACTTAGTTATCGAAGGAAEST: gi|124956509|gb|EL031424.1|EL031424
genomic: AAGATCATCAAGATTGTATCTGATCGTAACCCATCTAATCTCCCCTGGGGgtaagttaaa ... tgatgtttagGGAACTAGGCATTGACTTAGTTATCGAAGGAA
EST: AGATCATCAAGATTGTATCTGATCGTAACCCATCTAATCTCCCCGTGGGG GGAACTAGGCATTGEST: gi|116408023|gb|EG450615.1|EG450615
genomic: AGATCATCAAGATTGTATCTGATCGTAACCCATCTAATCTCCCC-TGGGGgtaagttaaa ... tgatgtttagGGAACTAGGCATTG
EST: AAGATCATCAAGATTGTATCTGATCGTAACCCATCTAATCTCCCCTGGGG GGAACTAGGCATTGACTTAGTTATCGAAGGAACCGGAGTGTTTGTTGACAGEST: gi|125026061|gb|EL098330.1|EL098330
genomic: AAGATCATCAAGATTGTATCTGATCGTAACCCATCTAATCTCCCCTGGGGgtaagttaaa ... tgatgtttagGGAACTAGGCATTGACTTAGTTATCGAAGGAACCGGAGTGTTTGTTGACAG
EST: ACCCATCTAATCTCCCCT-GGG GGAACTAGGCATTGACTTAGTTATCGAAGGAACCGGAGTGTTTGTTGACAGEST: gi|125192654|gb|EL207608.1|EL207608
genomic: ACCCATCTAATCTCCCCTGGGGgtaagttaaa ... tgatgtttagGGAACTAGGCATTGACTTAGTTATCGAAGGAACCGGAGTGTTTGTTGACAG
EST: CCCATCTAATCTCCCCTGGGG GGAACTAGGCATTGACTTAGTTATCGAAGGAACCGGAGTGTTTGTTGACAGEST: gi|125249588|gb|EL263673.1|EL263673
genomic: CCCATCTAATCTCCCCTGGGGgtaagttaaa ... tgatgtttagGGAACTAGGCATTGACTTAGTTATCGAAGGAACCGGAGTGTTTGTTGACAG
EST: AAGATCATCAAGATTGTATCTGATCGTAACCCATCTAATCTCCCCTGGGG GGAACTAGGCATTGEST: gi|124762370|gb|EH852500.1|EH852500
genomic: AAGATCATCAAGATTGTATCTGATCGTAACCCATCTAATCTCCCCTGGGGgtaagttaaa ... tgatgtttagGGAACTAGGCATTG
EST: ATCGTAACCCATCTAATCT-CCCTGGGG GGAACTAGGCATTGACTTAGTTATCGAAGGAACCGGAGTGTTTGTTGACAGEST: gi|125050737|gb|EL123006.1|EL123006
genomic: ATCGTAACCCATCTAATCTCCCCTGGGGgtaagttaaa ... tgatgtttagGGAACTAGGCATTGACTTAGTTATCGAAGGAACCGGAGTGTTTGTTGACAG
EST: ATCGTAACCCATCTAATCTCCCCT-GGG GGAACTAGGCATTGACTTAGTTATCGAAGGAACCGGAGTGTTTGTTGACAGEST: gi|125015186|gb|EL087455.1|EL087455
genomic: ATCGTAACCCATCTAATCTCCCCTGGGGgtaagttaaa ... tgatgtttagGGAACTAGGCATTGACTTAGTTATCGAAGGAACCGGAGTGTTTGTTGACAG
EST: AAGATCATCAAGATTGTATCTGATCGTAACCCATCTAATCTCCCCTGGGG G-AACTAGGCATTGACTTAGTTATCGAAGEST: gi|124784828|gb|EH874519.1|EH874519
genomic: AAGATCATCAAGATTGTATCTGATCGTAACCCATCTAATCTCCCCTGGGGgtaagttaaa ... tgatgtttagGGAACTAGGCATTGACTTAGTTATCGAAG
EST: AAGATCATCAAGATTGTATCTGATCGTAACCCATCTAATCTCCCCTGGGG GGAACTAGGCATTGACTT
genomic: AAGATCATCAAGATTGTATCTGATCGTAACCCATCTAATCTCCCCTGGGGgtaagttaaa ... tgatgtttagGGAACTAGGCATTGACTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGACGCTGATGTCAAACCTTCAGGAGACTCAGCTCTCTCTGTTGATGGAAAGATCATCAAGATTGTATCTGATCGTAACCCATCTAATCTCCCCTGGGGgtaagttaaaacaacacttctcatatcatttgaattgaatcaacccagttagatctaaacctggtgatgatgtttag
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