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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTTCAACACCTGACTAAAGAAGACTTGAGCAAGCTTTACTTTGGCAATTTCCAGATTCTGGACATTAATGGTTCCACATGTTTCCTTACCAGGACTGGgtaaaatttcatgtttcactatctgcttctagtcagatttgcttggttcaagtagacaatagctcaagaggaaaagttctgaagatctcataggtaatgaatgtctctgttttggtttttcag

Basic information

species Arabidopsis thaliana
transcript AT1G11860.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G11860.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA17G01550.1 (Glycine max), 5'ss of exon 3
TGCTTCAACACCTGACTAAAGAAGACTTGAGCAAGCTTTACTTTGGCAATTTCCAGATTCTGGACATTAATGGTTCCACATGTTTCCTTACCAGGACTGGgtaaaatttcatgtttcactatctgcttctagtcagatttgcttggttcaagtagacaatagctcaagaggaaaagttctgaagatctcataggtaatgaatgtctctgttttggtttttcag
| |||||||||||||| ||||| || ||||||||||| ||||||||  | ||||   |  ||||||| ||||| ||    ||||| ||||||||||| |||||   |||    | |    || | |||| |   | ||   |    || |   |  | |    | | ||       |  || |  |  | | ||  || | || || |  ||           
TTCTTCAACACCTGACAAAAGAGGATTTGAGCAAGCTCTACTTTGGGGAGTTCCGTGTGTTGGACATCAATGGCTCAGAGTGTTTTCTTACCAGGACAGGgtatgcttt----tcttgtcattttcttccaccaacatcacc--aatttattcatccgag---ttatgaaactccatcttgta--ttactttggctatca-tgcctttcctt-----------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124900235|gb|EH974853.1|EH974853
EST:     TTCCAGATTCTGGACATTAATGGTTCCACATGTTTCCTTACCAGGACTGG                         GTATACCGGGGAAGATGGGTTTGAGATTTCGGTTCCAGA
genomic: TTCCAGATTCTGGACATTAATGGTTCCACATGTTTCCTTACCAGGACTGGgtaaaatttc ... ggtttttcagGTATACCGGGGAAGATGGGTTTGAGATTTCGGTTCCAGA
EST: gi|124805673|gb|EH892936.1|EH892936
EST:     TGTTTCCTTACCAGGACTGG                         GTATACCGGGGAAGATGGGTTTGAGATTTCGGTTCCAGATGAGCATGCTGT
genomic: TGTTTCCTTACCAGGACTGGgtaaaatttc ... ggtttttcagGTATACCGGGGAAGATGGGTTTGAGATTTCGGTTCCAGATGAGCATGCTGT
EST: gi|125287201|gb|EL301286.1|EL301286
EST:     TTCCAGATTCTGGACATTAATGGTTCCACATGTTTCCTTACCAGGACTGG                         GTATACCGGGGAAGATGGGTTTGAGATTTCGGTTC
genomic: TTCCAGATTCTGGACATTAATGGTTCCACATGTTTCCTTACCAGGACTGGgtaaaatttc ... ggtttttcagGTATACCGGGGAAGATGGGTTTGAGATTTCGGTTC
EST: gi|125081495|gb|EL142699.1|EL142699
EST:     ATTAATGGTTCCACATGTTTCCTTACCAGGACTGG                         GTATACCGGGGAAGATGG-TT-GAGATTTCGGTTCCAGATGAGCATGCTGT
genomic: ATTAATGGTTCCACATGTTTCCTTACCAGGACTGGgtaaaatttc ... ggtttttcagGTATACCGGGGAAGATGGGTTTGAGATTTCGGTTCCAGATGAGCATGCTGT
EST: gi|125294859|gb|EL308944.1|EL308944
EST:     TTCCAGATTCTGGACATTAATGGTTCCACATGTTTCCTTACCAGGACTGG                         GTATACCGGGGAAGATGGGTTTGAGATTTCGGTT
genomic: TTCCAGATTCTGGACATTAATGGTTCCACATGTTTCCTTACCAGGACTGGgtaaaatttc ... ggtttttcagGTATACCGGGGAAGATGGGTTTGAGATTTCGGTT
EST: gi|125221815|gb|EL235900.1|EL235900
EST:     TGGTTCCACATGTTTCCTTACCAGGACTGG                         GTATACC-GGGAAGATGGGTTTGAGATTTCGGTTCCAGATGAGCATGCTGT
genomic: TGGTTCCACATGTTTCCTTACCAGGACTGGgtaaaatttc ... ggtttttcagGTATACCGGGGAAGATGGGTTTGAGATTTCGGTTCCAGATGAGCATGCTGT
EST: gi|125231677|gb|EL245762.1|EL245762
EST:     TACCAGGACTGG                         GTATACCGGGGAAGATGGGTTTGAGATTTCGGTTCCAGATGAGCATGCTGT
genomic: TACCAGGACTGGgtaaaatttc ... ggtttttcagGTATACCGGGGAAGATGGGTTTGAGATTTCGGTTCCAGATGAGCATGCTGT
EST: gi|125014384|gb|EL086653.1|EL086653
EST:     TCCAGATTTCTGGACATTAATGGTTCCACATGTTTCCTTACCAGGACTGG                         GTATACCGGGGAAGATGGGTTTGAGATTTCGGTTCCAGA
genomic: TCCAGA-TTCTGGACATTAATGGTTCCACATGTTTCCTTACCAGGACTGGgtaaaatttc ... ggtttttcagGTATACCGGGGAAGATGGGTTTGAGATTTCGGTTCCAGA
EST: gi|125063254|gb|EL131299.1|EL131299
EST:     TTCCAGATTCTGGACATTAATGGTTCCACATGTTTCCTTACCAGGACTGG                         GTATACCGGGGAAGATGGGTTTGAGATTTCGG
genomic: TTCCAGATTCTGGACATTAATGGTTCCACATGTTTCCTTACCAGGACTGGgtaaaatttc ... ggtttttcagGTATACCGGGGAAGATGGGTTTGAGATTTCGG
EST: gi|125010791|gb|EL083060.1|EL083060
EST:     TTCCAGATTCTGGACATTAATGGTTCCACATGTTTCCTTACCAGGACTGG                         GTATACCGGGGAAGATGGGTTTGAGATTTCGGTTCCAGATGAGCATGCTGT
genomic: TTCCAGATTCTGGACATTAATGGTTCCACATGTTTCCTTACCAGGACTGGgtaaaatttc ... ggtttttcagGTATACCGGGGAAGATGGGTTTGAGATTTCGGTTCCAGATGAGCATGCTGT
EST: gi|125003052|gb|EL075321.1|EL075321
EST:     TTCCAGATTCTGGACATTAATGGTTCCACATGTTTCCTTACCAGGACTGG                         GTATACCGGGGAAGATGGGTTTGAGA
genomic: TTCCAGATTCTGGACATTAATGGTTCCACATGTTTCCTTACCAGGACTGGgtaaaatttc ... ggtttttcagGTATACCGGGGAAGATGGGTTTGAGA
EST: gi|124745307|gb|EH836267.1|EH836267
EST:     TTCTGGACATTAATGGTTCCACATGTTTCCTTACCAGGACTGG                         GTATACCGGGGAAGATGGGTTTGAGATTTCGGTTCCAGATGAAGCATGCTG
genomic: TTCTGGACATTAATGGTTCCACATGTTTCCTTACCAGGACTGGgtaaaatttc ... ggtttttcagGTATACCGGGGAAGATGGGTTTGAGATTTCGGTTCCAGATGA-GCATGCTG
EST: gi|124970399|gb|EL044232.1|EL044232
EST:     TTAATGGTTCCACATGTTTCCTTACCAGGACTGG                         GTATACCGGGGAAGATGGGTTTGAGATTTCGGTTCCAGATGAGCATGCTGT
genomic: TTAATGGTTCCACATGTTTCCTTACCAGGACTGGgtaaaatttc ... ggtttttcagGTATACCGGGGAAGATGGGTTTGAGATTTCGGTTCCAGATGAGCATGCTGT
EST: gi|125105432|gb|EL159197.1|EL159197
EST:     CAGATTCTGGACATTAATGGTTCCACATGTTTCCTTACCAGGACTGG                         GTATACCGGGGAAGATGGGTTTGAGATTTCGGTTCCAGATGAGCATGCTGT
genomic: CAGATTCTGGACATTAATGGTTCCACATGTTTCCTTACCAGGACTGGgtaaaatttc ... ggtttttcagGTATACCGGGGAAGATGGGTTTGAGATTTCGGTTCCAGATGAGCATGCTGT
EST: gi|47832124|gb|CK121808.1|CK121808
EST:     TTCCAGATTCTGGACATTAATGGTTCCACATGTTTCCTTACCAGGACTGG                         GTATACCGGGGAAGATGGGTTTTGAGATTTCGGTTCCAGATGAGCATGCTG
genomic: TTCCAGATTCTGGACATTAATGGTTCCACATGTTTCCTTACCAGGACTGGgtaaaatttc ... ggtttttcagGTATACCGGGGAAGATGGGTTT-GAGATTTCGGTTCCAGATGAGCATGCTG
EST: gi|125063788|gb|EL131643.1|EL131643
EST:     TTCCAGATTCTGGACATTAATGGTTCCACATGTTTCCTTACCAGGACTGG                         GTATACCGGGGAAGATGGGTTTGAGATTTCGGTT
genomic: TTCCAGATTCTGGACATTAATGGTTCCACATGTTTCCTTACCAGGACTGGgtaaaatttc ... ggtttttcagGTATACCGGGGAAGATGGGTTTGAGATTTCGGTT
EST: gi|125215586|gb|EL229670.1|EL229670
EST:     TGTTTCCTTACCAGGACTGG                         GTATACCGGGGAAGATGGGTTTGAGATTTCGGTTCCAGATGAGCATGCTGT
genomic: TGTTTCCTTACCAGGACTGGgtaaaatttc ... ggtttttcagGTATACCGGGGAAGATGGGTTTGAGATTTCGGTTCCAGATGAGCATGCTGT
EST: gi|124756859|gb|EH846989.1|EH846989
EST:     TGTTTCCTTACCAGGACTGG                         GTATACCGGGGAAGATGGGTTTGAGATTTCGGTTCCAGATGAGCATGCTGT
genomic: TGTTTCCTTACCAGGACTGGgtaaaatttc ... ggtttttcagGTATACCGGGGAAGATGGGTTTGAGATTTCGGTTCCAGATGAGCATGCTGT
EST: gi|125240059|gb|EL254144.1|EL254144
EST:     TCCAGATTCTGGACATTAATGGTTCCACATTGTTTCCTTACCAGGACTGG                         GTATACCGGGGAAGATTGGGTTTGA
genomic: TCCAGATTCTGGACATTAATGGTTCCACAT-GTTTCCTTACCAGGACTGGgtaaaatttc ... ggtttttcagGTATACCGGGGAAGAT-GGGTTTGA
EST: gi|116483791|gb|EG526383.1|EG526383
EST:     TTCCAGATTCTGGACATTAATGGTTCCACATGTTTCCTTACCAGGACTGG                         GTATACCGGGGAAGATGGGTTTGA
genomic: TTCCAGATTCTGGACATTAATGGTTCCACATGTTTCCTTACCAGGACTGGgtaaaatttc ... ggtttttcagGTATACCGGGGAAGATGGGTTTGA
EST: gi|125202929|gb|EL217883.1|EL217883
EST:     TTCCAGATTCTGGACATTAATGGTTCCACATGTTTCCTTACCAGGACTGG                         GTATACCGGGGAAGATTGGGTTTGA
genomic: TTCCAGATTCTGGACATTAATGGTTCCACATGTTTCCTTACCAGGACTGGgtaaaatttc ... ggtttttcagGTATACCGGGGAAGAT-GGGTTTGA
EST: gi|125132367|gb|EL174483.1|EL174483
EST:     TTCCACATGTTTCCTTACCAGGACTGG                         GTATACCGGGGAAGATGGGTTTGAGATTTCGGTTCCAGATGAGCATGCTGT
genomic: TTCCACATGTTTCCTTACCAGGACTGGgtaaaatttc ... ggtttttcagGTATACCGGGGAAGATGGGTTTGAGATTTCGGTTCCAGATGAGCATGCTGT