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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTCTTCGTTTTTCGAGTTTCATGAACCTGATGgtaattacatttctatttctgttcatgctgtaggaaagaggaattttttatgtaaccactctgataatacctaagcaagaatcaacttctaattctgtgagttatcttagaaagattatctcgatcattttgtggtattcaaaatgaggtgcttactcaggtgctaaaattggcag

Basic information

species Arabidopsis thaliana
transcript AT1G10600.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G10600.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv01s0127g00710.t01 (Vitis vinifera), 5'ss of exon 5
GGTTCTTCGTTTTTCGAGTTTCATGAACCTGATGgtaattacatttctatttctgttcatgctgtaggaaagaggaattttttatgtaaccactctgataatacctaagcaagaatcaacttctaattctgtgagttat-----cttagaaagattatctcgatcattttgtggtattcaaaatgaggtgct-tactcaggtgctaaaattg-gcag--------------------------------
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-------------------------------------------------------------------AAAATGGGGACCTTCTATGTAACTACTCTGATAATACCCAAGCAGGAATCAACTTCCAACAGTgtaagcctctggggcttttgtctataatcttgattccatttgagatttaggcttcaagtattcttctaaaaggctatacttctgtattcattctgctgacttgtttatgctgaatgcag