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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATAGTGAACCAGATATTATTGATGGGGCTGGTGCTGAGCCTGGTCATGTGATTAGAACCACACTCCGTGGTCGAAATGGTCAATCAAGACAGgttggatggttatggataattgtatgtgttagttggtaatgtagtttatctaactgtttctcatatagattttttttggattggcag

Basic information

species Arabidopsis thaliana
transcript AT1G09840.6
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G09840.6 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv12s0035g01060.t01 (Vitis vinifera), 5'ss of exon 2
GATAGTGAACCAGATATTATTGATGGGGCTGGTGCTGAGCCTGGTCATGTGATTAGAACCACACTCCGTGGTCGAAATGGTCAATCAAGACAGgttggatg---gtta---tggataattgtatgtgttagttggtaatgtagtttatctaactgtttctcatatagattttttttggattggcag-----------------------------------
||||| ||||| |||||||||||||| |  ||||||||  | |||||||| || ||||| ||  |  ||||||||||||||||||| |  ||||| ||| |    |||   || |  |||  |  | || |  |  ||| ||   ||  | | |  |    |  || |  | ||    |     |                                    
GATAGCGAACCTGATATTATTGATGGTGTGGGTGCTGAAGCAGGTCATGTAATAAGAACAACTTTTGGTGGTCGAAATGGTCAATCTAAGCAGgtaggaagcaaattagtttgtaagattaca-atatttgacgtcaat-taacataaatcattaatgtcaaggtaaacatcttacataagaatatatatattttggaacatgtcatgtttggatttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124929686|gb|EL007209.1|EL007209
EST:     CGAAATGGTCAATCAAGACAG                         ACAGTCAGTTACATATCAGAACATGTTGTTGGTACTGGTTCCTTTGGCATA
genomic: CGAAATGGTCAATCAAGACAGgttggatggt ... ggattggcagACAGTCAGTTACATATCAGAACATGTTGTTGGTACTGGTTCCTTTGGCAT-