1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
AGTTTGGTTTCAACGACCAAAAGACATTGTCAGAAAGTTGCTATCAGGAGATCTGGATCTAGGCATCGTTGGTCTTGACATAGTTGGTGAATTTGGTCAGgtaaatgacatcataatcatatatcttgattagcagacacctgttgagattctagggtatcttagtgctggtgcctggtgcttaatgattatactgattt...
species | Arabidopsis thaliana |
transcript | AT1G09795.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ATCTGGATCTGGGCATCGTTGGTCTTGACATAGTTGGTGAATTTGGTCAG GGAAATGAAGATCTTATCATEST: gi|125046229|gb|EL118498.1|EL118498
genomic: ATCTGGATCTAGGCATCGTTGGTCTTGACATAGTTGGTGAATTTGGTCAGgtaaatgaca ... ctattttcagGGAAATGAAGATCTTATCAT
EST: GGTGAATTTGGTCAG GGAAATGAAGATCTTATCATTGTCCACGAAGCTCTCAACTT-GGAGATTGTEST: gi|125255934|gb|EL270019.1|EL270019
genomic: GGTGAATTTGGTCAGgtaaatgaca ... ctattttcagGGAAATGAAGATCTTATCATTGTCCACGAAGCTCTCAACTTTGGAGATTGT
EST: ATCTGGATCTAGGCATCGTTGGTCTTGACATAGTTGGTGAATTTGGTCAG GGAAATGAAGATCTTATCATTGTCC
genomic: ATCTGGATCTAGGCATCGTTGGTCTTGACATAGTTGGTGAATTTGGTCAGgtaaatgaca ... ctattttcagGGAAATGAAGATCTTATCATTGTCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTTTGGTTTCAACGACCAAAAGACATTGTCAGAAAGTTGCTATCAGGAGATCTGGATCTAGGCATCGTTGGTCTTGACATAGTTGGTGAATTTGGTCAGgtaaatgacatcataatcatatatcttgattagcagacacctgttgagattctagggtatcttagtgctggtgcctggtgcttaatgattatactgattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agcagaca