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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAATTCCTCAAGGCGCAAGCAGGGATGAGTGGCTTCAAGCTCTTCCTAGGGCTTTAGTTGCTGGCTTTGTGAAAACTGACATTGAATTTCAGCAGAAAGgtcttagcttatgcttattttttaaaggctttttgctttctattcttgtttttcaagcatgctctaaccgataagatctgttgtgcttacag

Basic information

species Arabidopsis thaliana
transcript AT1G09160.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G09160.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA20G38270.1 (Glycine max), 5'ss of exon 3
GCAATTCCTCAAGGCGCAAGCAGGGATGAGTGGCTTCAAGCTCTTCCTAGGGCTTTAGTTGCTGGCTTTGTGAAAACTGACATTGAATTTCAGCAGAAAGgtcttagcttatgcttattttttaaaggctttttgctttctattcttgtttttcaagcatgctctaaccgataagatctgttgtgcttacag
||||| || ||||      | ||||||||||||||||||||||| ||| | ||| |||||| ||| ||||| ||||||||||| || |||||| | ||||||        || |  | ||||      |||| |  |  |||||   ||| | || |    || |  | |||    |   || ||| | |||
GCAATACCGCAAGATATGGGTAGGGATGAGTGGCTTCAAGCTCTGCCTCGTGCTCTAGTTGTTGGTTTTGTAAAAACTGACATAGAGTTTCAGAAAAAAGgtac------attcagagtttt------ctttgta-tccctattggagttctccacgtgcacttttcctgatctt-ttaattttgcctgcag

upper sequence: AT1G09160.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA10G29060.1 (Glycine max), 5'ss of exon 3
GCAATTCCTCAAGGCGCAAGCAGGGATGAGTGGCTTCAAGCTCTTCCTAGGGCTTTAGTTGCTGGCTTTGTGAAAACTGACATTGAATTTCAGCAGAAAGgtcttagcttatgcttattttttaaaggctttttgctttctattcttgtttttcaagcatgctctaaccgataagatctgttgtgcttacag
||||| || ||||     || ||||||||||||||||||||||| ||| | ||| |||||| ||| ||||| ||||||||||| || |||||| | ||||||      | |   || | ||     ||| |        |||||   ||| | ||      || |    ||    ||   || ||| | |||
GCAATACCACAAGATATCAGTAGGGATGAGTGGCTTCAAGCTCTGCCTCGTGCTCTAGTTGTTGGTTTTGTAAAAACTGACATAGAGTTTCAGAAAAAAGgtac--attcagagttttctt-----ggcatcc------ctattggagttctccacatgcacttttcttgaccttata-attttgcctgcag

upper sequence: AT1G09160.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv14s0060g01580.t01 (Vitis vinifera), 5'ss of exon 3
GCAATTCCTCAAGGCGCAAGCAGGGATGAGTGGCTTCAAGCTCTTCCTAGGGCTTTAGTTGCTGGCTTTGTGAAAACTGACATTGAATTTCAGCAGAAAGgtcttagcttatgcttattttttaaaggctttttgctttctattcttgtttttcaagcatgctctaaccgataagatctgttgtgctt-acag
|||||||||||||||    |  |||| |  ||||||||||| |||||| ||||| | ||||| || |||||||||||||| || |||||||||||||||||    | | |||     |  ||| |     | |     |   | | | | |||      || ||| | |  ||| || || | |   | ||||
GCAATTCCTCAAGGCATTGGTCGGGAAGGTTGGCTTCAAGCCCTTCCTCGGGCTCTGGTTGCCGGATTTGTGAAAACTGATATAGAATTTCAGCAGAAAGgcaagaacctatttccctaatttcagcatctctaagccttgttgcatatatttt---tgtgttcttatctttaatatttgatataaatgacag